Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03111

Experiment: 2-furoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03110 and H281DRAFT_03111 are separated by 16 nucleotidesH281DRAFT_03111 and H281DRAFT_03112 are separated by 7 nucleotides H281DRAFT_03110: H281DRAFT_03110 - concentrative nucleoside transporter, CNT family, at 144,841 to 146,118 _03110 H281DRAFT_03111: H281DRAFT_03111 - cytidine deaminase, at 146,135 to 146,524 _03111 H281DRAFT_03112: H281DRAFT_03112 - Inosine-uridine nucleoside N-ribohydrolase, at 146,532 to 147,497 _03112 Position (kb) 146 147Strain fitness (log2 ratio) -1 0 1at 145.193 kb on - strand, within H281DRAFT_03110at 145.846 kb on + strand, within H281DRAFT_03110at 146.107 kb on - strandat 146.302 kb on + strand, within H281DRAFT_03111at 146.517 kb on - strandat 146.521 kb on - strandat 146.554 kb on - strandat 146.633 kb on - strand, within H281DRAFT_03112at 147.151 kb on - strand, within H281DRAFT_03112at 147.151 kb on - strand, within H281DRAFT_03112at 147.258 kb on + strand, within H281DRAFT_03112at 147.259 kb on - strand, within H281DRAFT_03112at 147.285 kb on + strand, within H281DRAFT_03112at 147.285 kb on + strand, within H281DRAFT_03112at 147.286 kb on - strand, within H281DRAFT_03112at 147.286 kb on - strand, within H281DRAFT_03112at 147.383 kb on + strand, within H281DRAFT_03112

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-furoic (C)
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145,193 - H281DRAFT_03110 0.28 -0.4
145,846 + H281DRAFT_03110 0.79 +0.1
146,107 - -0.0
146,302 + H281DRAFT_03111 0.43 -0.0
146,517 - +0.3
146,521 - +0.7
146,554 - -0.3
146,633 - H281DRAFT_03112 0.10 -1.4
147,151 - H281DRAFT_03112 0.64 +0.1
147,151 - H281DRAFT_03112 0.64 -0.3
147,258 + H281DRAFT_03112 0.75 -1.3
147,259 - H281DRAFT_03112 0.75 +0.4
147,285 + H281DRAFT_03112 0.78 +0.5
147,285 + H281DRAFT_03112 0.78 +0.1
147,286 - H281DRAFT_03112 0.78 -0.6
147,286 - H281DRAFT_03112 0.78 +0.2
147,383 + H281DRAFT_03112 0.88 +0.1

Or see this region's nucleotide sequence