Strain Fitness in Marinobacter adhaerens HP15 around HP15_72

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_71 and HP15_72 are separated by 126 nucleotidesHP15_72 and HP15_73 are separated by 846 nucleotides HP15_71: HP15_71 - hypothetical protein, at 79,518 to 79,655 _71 HP15_72: HP15_72 - conserved hypothetical protein, at 79,782 to 80,045 _72 HP15_73: HP15_73 - hypothetical protein, at 80,892 to 81,146 _73 Position (kb) 79 80 81Strain fitness (log2 ratio) -1 0 1at 78.797 kb on - strandat 78.902 kb on + strandat 78.940 kb on - strandat 78.958 kb on - strandat 79.020 kb on - strandat 79.032 kb on + strandat 79.089 kb on + strandat 79.101 kb on + strandat 79.157 kb on + strandat 79.239 kb on + strandat 79.247 kb on - strandat 79.256 kb on - strandat 79.274 kb on + strandat 79.274 kb on + strandat 79.277 kb on - strandat 79.329 kb on - strandat 79.354 kb on - strandat 79.381 kb on + strandat 79.381 kb on + strandat 79.381 kb on + strandat 79.381 kb on + strandat 79.389 kb on - strandat 79.421 kb on - strandat 79.421 kb on - strandat 79.498 kb on + strandat 79.506 kb on - strandat 79.516 kb on - strandat 79.525 kb on + strandat 79.528 kb on - strandat 79.582 kb on + strand, within HP15_71at 79.607 kb on + strand, within HP15_71at 79.638 kb on + strand, within HP15_71at 79.671 kb on - strandat 79.801 kb on - strandat 79.819 kb on + strand, within HP15_72at 79.820 kb on + strand, within HP15_72at 79.827 kb on - strand, within HP15_72at 79.838 kb on + strand, within HP15_72at 79.843 kb on + strand, within HP15_72at 79.877 kb on - strand, within HP15_72at 79.877 kb on - strand, within HP15_72at 79.877 kb on - strand, within HP15_72at 79.954 kb on - strand, within HP15_72at 80.050 kb on + strandat 80.050 kb on + strandat 80.050 kb on + strandat 80.053 kb on + strandat 80.053 kb on + strandat 80.110 kb on + strandat 80.111 kb on + strandat 80.130 kb on + strandat 80.138 kb on - strandat 80.267 kb on + strandat 80.309 kb on + strandat 80.347 kb on + strandat 80.419 kb on + strandat 80.419 kb on + strandat 80.427 kb on - strandat 80.444 kb on + strandat 80.444 kb on + strandat 80.713 kb on + strandat 80.713 kb on + strandat 80.721 kb on + strandat 80.721 kb on - strandat 80.721 kb on - strandat 80.771 kb on - strandat 80.781 kb on - strandat 80.786 kb on - strandat 80.815 kb on + strandat 80.912 kb on - strandat 80.921 kb on - strand, within HP15_73at 80.921 kb on - strand, within HP15_73at 80.935 kb on + strand, within HP15_73at 80.945 kb on + strand, within HP15_73at 80.965 kb on + strand, within HP15_73at 80.973 kb on - strand, within HP15_73at 80.973 kb on - strand, within HP15_73

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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78,797 - +0.5
78,902 + +0.4
78,940 - -0.1
78,958 - -1.1
79,020 - +0.6
79,032 + -0.1
79,089 + -0.9
79,101 + -0.6
79,157 + -0.6
79,239 + +1.3
79,247 - -0.8
79,256 - +0.0
79,274 + +0.6
79,274 + +1.0
79,277 - -1.2
79,329 - +0.5
79,354 - +0.8
79,381 + -0.1
79,381 + -0.9
79,381 + +0.8
79,381 + -0.6
79,389 - -0.3
79,421 - -0.7
79,421 - +0.2
79,498 + -0.2
79,506 - +0.4
79,516 - -0.4
79,525 + +0.1
79,528 - +0.5
79,582 + HP15_71 0.46 -0.3
79,607 + HP15_71 0.64 -0.6
79,638 + HP15_71 0.87 +0.7
79,671 - +0.5
79,801 - +1.2
79,819 + HP15_72 0.14 -0.7
79,820 + HP15_72 0.14 -0.1
79,827 - HP15_72 0.17 -0.5
79,838 + HP15_72 0.21 -0.2
79,843 + HP15_72 0.23 +0.2
79,877 - HP15_72 0.36 -0.6
79,877 - HP15_72 0.36 +0.1
79,877 - HP15_72 0.36 -0.4
79,954 - HP15_72 0.65 +1.0
80,050 + -0.4
80,050 + +1.6
80,050 + +0.0
80,053 + -0.1
80,053 + +0.2
80,110 + -0.7
80,111 + +0.3
80,130 + +0.8
80,138 - +0.5
80,267 + +0.0
80,309 + +1.1
80,347 + +0.6
80,419 + +0.1
80,419 + +0.3
80,427 - -0.8
80,444 + +0.0
80,444 + +0.6
80,713 + -0.6
80,713 + +1.3
80,721 + +0.5
80,721 - -1.3
80,721 - -0.6
80,771 - +0.1
80,781 - -0.4
80,786 - +0.1
80,815 + -0.4
80,912 - +0.2
80,921 - HP15_73 0.11 +0.9
80,921 - HP15_73 0.11 +0.3
80,935 + HP15_73 0.17 +1.0
80,945 + HP15_73 0.21 +1.0
80,965 + HP15_73 0.29 +0.0
80,973 - HP15_73 0.32 +0.1
80,973 - HP15_73 0.32 +1.0

Or see this region's nucleotide sequence