Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_66 and HP15_67 are separated by 333 nucleotides HP15_67 and HP15_68 are separated by 215 nucleotides
HP15_66: HP15_66 - adenylate cyclase, at 70,790 to 72,199
_66
HP15_67: HP15_67 - short-chain dehydrogenase/reductase SDR, at 72,533 to 72,934
_67
HP15_68: HP15_68 - sensory box/FOG: EAL domain/GGDEF domain containing protein, at 73,150 to 76,638
_68
Position (kb) 72
73 Strain fitness (log2 ratio) -1
0
1 at 71.561 kb on - strand, within HP15_66 at 71.561 kb on - strand, within HP15_66 at 71.709 kb on - strand, within HP15_66 at 71.715 kb on + strand, within HP15_66 at 71.720 kb on + strand, within HP15_66 at 71.728 kb on - strand, within HP15_66 at 71.736 kb on + strand, within HP15_66 at 71.888 kb on - strand, within HP15_66 at 71.907 kb on + strand, within HP15_66 at 71.907 kb on + strand, within HP15_66 at 72.087 kb on - strand at 72.094 kb on - strand at 72.167 kb on + strand at 72.167 kb on + strand at 72.284 kb on + strand at 72.292 kb on - strand at 72.292 kb on - strand at 72.413 kb on + strand at 72.555 kb on - strand at 72.584 kb on - strand, within HP15_67 at 72.598 kb on + strand, within HP15_67 at 72.636 kb on - strand, within HP15_67 at 72.636 kb on - strand, within HP15_67 at 72.638 kb on + strand, within HP15_67 at 72.643 kb on + strand, within HP15_67 at 72.643 kb on + strand, within HP15_67 at 72.649 kb on - strand, within HP15_67 at 72.665 kb on + strand, within HP15_67 at 72.673 kb on - strand, within HP15_67 at 72.739 kb on + strand, within HP15_67 at 73.065 kb on - strand at 73.084 kb on + strand at 73.107 kb on + strand at 73.115 kb on - strand at 73.156 kb on + strand at 73.306 kb on - strand at 73.331 kb on + strand at 73.339 kb on - strand at 73.396 kb on + strand at 73.414 kb on - strand at 73.444 kb on - strand at 73.496 kb on - strand at 73.511 kb on + strand, within HP15_68 at 73.569 kb on + strand, within HP15_68 at 73.577 kb on - strand, within HP15_68 at 73.579 kb on + strand, within HP15_68 at 73.579 kb on - strand, within HP15_68 at 73.623 kb on + strand, within HP15_68 at 73.648 kb on + strand, within HP15_68 at 73.726 kb on - strand, within HP15_68 at 73.761 kb on - strand, within HP15_68 at 73.802 kb on + strand, within HP15_68 at 73.832 kb on + strand, within HP15_68 at 73.841 kb on - strand, within HP15_68 at 73.874 kb on + strand, within HP15_68 at 73.887 kb on - strand, within HP15_68 at 73.906 kb on - strand, within HP15_68 at 73.912 kb on - strand, within HP15_68 at 73.924 kb on - strand, within HP15_68
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 71,561 - HP15_66 0.55 +0.1 71,561 - HP15_66 0.55 -0.5 71,709 - HP15_66 0.65 -0.7 71,715 + HP15_66 0.66 -0.1 71,720 + HP15_66 0.66 +0.3 71,728 - HP15_66 0.67 +0.3 71,736 + HP15_66 0.67 +0.6 71,888 - HP15_66 0.78 +0.4 71,907 + HP15_66 0.79 +0.8 71,907 + HP15_66 0.79 -1.7 72,087 - +0.0 72,094 - -0.1 72,167 + +0.5 72,167 + +0.0 72,284 + +0.1 72,292 - -0.3 72,292 - +1.4 72,413 + +1.2 72,555 - -1.0 72,584 - HP15_67 0.13 -0.7 72,598 + HP15_67 0.16 -0.9 72,636 - HP15_67 0.26 -0.4 72,636 - HP15_67 0.26 +0.4 72,638 + HP15_67 0.26 -0.5 72,643 + HP15_67 0.27 +0.0 72,643 + HP15_67 0.27 +1.0 72,649 - HP15_67 0.29 +0.6 72,665 + HP15_67 0.33 -0.6 72,673 - HP15_67 0.35 -0.9 72,739 + HP15_67 0.51 -1.6 73,065 - -0.0 73,084 + -1.3 73,107 + -0.3 73,115 - -0.9 73,156 + +0.3 73,306 - +1.4 73,331 + -0.8 73,339 - -1.0 73,396 + -0.5 73,414 - +0.4 73,444 - +0.0 73,496 - +0.0 73,511 + HP15_68 0.10 +0.4 73,569 + HP15_68 0.12 +0.0 73,577 - HP15_68 0.12 -0.3 73,579 + HP15_68 0.12 +0.2 73,579 - HP15_68 0.12 -0.2 73,623 + HP15_68 0.14 +1.6 73,648 + HP15_68 0.14 -1.5 73,726 - HP15_68 0.17 -0.8 73,761 - HP15_68 0.18 +0.9 73,802 + HP15_68 0.19 -0.6 73,832 + HP15_68 0.20 +1.0 73,841 - HP15_68 0.20 +0.7 73,874 + HP15_68 0.21 -0.2 73,887 - HP15_68 0.21 -0.5 73,906 - HP15_68 0.22 -1.0 73,912 - HP15_68 0.22 -0.5 73,924 - HP15_68 0.22 +0.0
Or see this region's nucleotide sequence