Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_515 and HP15_516 are separated by 588 nucleotides HP15_516 and HP15_517 are separated by 68 nucleotides HP15_517 and HP15_518 overlap by 4 nucleotides
HP15_515: HP15_515 - hydroxymethylbutenyl pyrophosphate reductase, at 528,190 to 529,143
_515
HP15_516: HP15_516 - hypothetical protein, at 529,732 to 529,857
_516
HP15_517: HP15_517 - membrane or secreted protein, at 529,926 to 530,321
_517
HP15_518: HP15_518 - type IV pilus assembly protein PilW, at 530,318 to 531,349
_518
Position (kb) 529
530
531 Strain fitness (log2 ratio) -1
0
1
2 at 529.138 kb on + strand at 529.138 kb on + strand at 529.174 kb on - strand at 529.239 kb on + strand at 529.268 kb on + strand at 529.421 kb on - strand at 529.430 kb on - strand at 529.467 kb on - strand at 529.479 kb on - strand at 529.556 kb on - strand at 529.556 kb on - strand at 529.568 kb on - strand at 529.860 kb on - strand at 529.898 kb on + strand at 529.906 kb on - strand at 530.152 kb on + strand, within HP15_517 at 530.160 kb on - strand, within HP15_517 at 530.215 kb on - strand, within HP15_517 at 530.254 kb on + strand, within HP15_517 at 530.627 kb on - strand, within HP15_518 at 530.727 kb on + strand, within HP15_518 at 530.867 kb on + strand, within HP15_518 at 531.033 kb on - strand, within HP15_518 at 531.033 kb on - strand, within HP15_518 at 531.099 kb on + strand, within HP15_518 at 531.099 kb on + strand, within HP15_518 at 531.108 kb on - strand, within HP15_518 at 531.108 kb on - strand, within HP15_518 at 531.108 kb on - strand, within HP15_518 at 531.207 kb on + strand, within HP15_518 at 531.207 kb on + strand, within HP15_518 at 531.252 kb on + strand at 531.252 kb on + strand at 531.260 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 529,138 + -0.0 529,138 + +1.9 529,174 - +1.6 529,239 + +0.9 529,268 + +1.3 529,421 - +0.5 529,430 - -0.4 529,467 - +0.9 529,479 - -0.0 529,556 - +0.8 529,556 - +0.1 529,568 - -0.7 529,860 - +1.2 529,898 + +0.7 529,906 - +0.3 530,152 + HP15_517 0.57 +0.2 530,160 - HP15_517 0.59 +0.4 530,215 - HP15_517 0.73 +0.9 530,254 + HP15_517 0.83 +0.4 530,627 - HP15_518 0.30 -0.7 530,727 + HP15_518 0.40 -0.2 530,867 + HP15_518 0.53 +0.9 531,033 - HP15_518 0.69 +0.9 531,033 - HP15_518 0.69 -0.0 531,099 + HP15_518 0.76 +0.9 531,099 + HP15_518 0.76 +0.1 531,108 - HP15_518 0.77 +1.3 531,108 - HP15_518 0.77 +1.0 531,108 - HP15_518 0.77 -1.4 531,207 + HP15_518 0.86 -0.6 531,207 + HP15_518 0.86 -0.1 531,252 + -0.1 531,252 + -0.1 531,260 - +1.3
Or see this region's nucleotide sequence