Strain Fitness in Marinobacter adhaerens HP15 around HP15_3800

Experiment: Ethanol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3799 and HP15_3800 are separated by 426 nucleotidesHP15_3800 and HP15_3801 are separated by 88 nucleotides HP15_3799: HP15_3799 - acetyl-CoA synthetase, at 4,022,015 to 4,024,003 _3799 HP15_3800: HP15_3800 - isocitrate dehydrogenase, NADP-dependent, at 4,024,430 to 4,026,673 _3800 HP15_3801: HP15_3801 - sodium/hydrogen exchanger, at 4,026,762 to 4,027,955 _3801 Position (kb) 4024 4025 4026 4027Strain fitness (log2 ratio) -1 0 1at 4023.441 kb on - strand, within HP15_3799at 4023.671 kb on + strand, within HP15_3799at 4023.720 kb on - strand, within HP15_3799at 4023.945 kb on - strandat 4023.950 kb on + strandat 4023.958 kb on - strandat 4023.960 kb on + strandat 4024.051 kb on + strandat 4024.061 kb on + strandat 4024.086 kb on + strandat 4024.113 kb on + strandat 4024.150 kb on - strandat 4024.172 kb on + strandat 4024.274 kb on + strandat 4026.670 kb on - strandat 4026.680 kb on - strandat 4026.822 kb on + strandat 4027.063 kb on + strand, within HP15_3801at 4027.073 kb on + strand, within HP15_3801at 4027.081 kb on - strand, within HP15_3801at 4027.160 kb on - strand, within HP15_3801at 4027.232 kb on + strand, within HP15_3801at 4027.307 kb on + strand, within HP15_3801at 4027.312 kb on + strand, within HP15_3801at 4027.312 kb on + strand, within HP15_3801at 4027.350 kb on + strand, within HP15_3801at 4027.459 kb on + strand, within HP15_3801at 4027.534 kb on + strand, within HP15_3801at 4027.552 kb on - strand, within HP15_3801at 4027.645 kb on + strand, within HP15_3801

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
remove
4,023,441 - HP15_3799 0.72 -0.1
4,023,671 + HP15_3799 0.83 +0.4
4,023,720 - HP15_3799 0.86 +0.8
4,023,945 - -0.8
4,023,950 + -0.8
4,023,958 - +0.5
4,023,960 + +0.0
4,024,051 + -0.2
4,024,061 + -0.7
4,024,086 + +1.7
4,024,113 + -0.4
4,024,150 - -0.8
4,024,172 + -0.2
4,024,274 + +0.8
4,026,670 - -0.9
4,026,680 - +1.2
4,026,822 + +1.2
4,027,063 + HP15_3801 0.25 -0.3
4,027,073 + HP15_3801 0.26 +0.6
4,027,081 - HP15_3801 0.27 +0.3
4,027,160 - HP15_3801 0.33 +0.2
4,027,232 + HP15_3801 0.39 -1.4
4,027,307 + HP15_3801 0.46 +0.1
4,027,312 + HP15_3801 0.46 +1.2
4,027,312 + HP15_3801 0.46 -0.4
4,027,350 + HP15_3801 0.49 +1.2
4,027,459 + HP15_3801 0.58 +0.6
4,027,534 + HP15_3801 0.65 +1.2
4,027,552 - HP15_3801 0.66 +0.6
4,027,645 + HP15_3801 0.74 +0.6

Or see this region's nucleotide sequence