Strain Fitness in Marinobacter adhaerens HP15 around HP15_3668

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3665 and HP15_3666 are separated by 67 nucleotidesHP15_3666 and HP15_3667 are separated by 5 nucleotidesHP15_3667 and HP15_3668 are separated by 317 nucleotidesHP15_3668 and HP15_3669 are separated by 256 nucleotides HP15_3665: HP15_3665 - two-component sensor histidine kinase, at 3,862,291 to 3,864,273 _3665 HP15_3666: HP15_3666 - hypothetical protein, at 3,864,341 to 3,864,637 _3666 HP15_3667: HP15_3667 - membrane or secreted protein, at 3,864,643 to 3,864,879 _3667 HP15_3668: HP15_3668 - sodium/proton antiporter, at 3,865,197 to 3,866,702 _3668 HP15_3669: HP15_3669 - sensory box sensor histidine kinase, at 3,866,959 to 3,867,720 _3669 Position (kb) 3865 3866 3867Strain fitness (log2 ratio) -2 -1 0 1at 3864.297 kb on - strandat 3864.309 kb on - strandat 3864.338 kb on + strandat 3864.338 kb on + strandat 3864.356 kb on + strandat 3864.374 kb on - strand, within HP15_3666at 3864.469 kb on - strand, within HP15_3666at 3864.541 kb on + strand, within HP15_3666at 3864.656 kb on - strandat 3864.656 kb on - strandat 3864.656 kb on - strandat 3864.670 kb on + strand, within HP15_3667at 3864.721 kb on - strand, within HP15_3667at 3864.726 kb on + strand, within HP15_3667at 3864.779 kb on + strand, within HP15_3667at 3864.915 kb on + strandat 3864.923 kb on - strandat 3865.019 kb on - strandat 3865.047 kb on - strandat 3865.148 kb on - strandat 3865.166 kb on - strandat 3865.270 kb on + strandat 3865.364 kb on + strand, within HP15_3668at 3865.364 kb on + strand, within HP15_3668at 3865.372 kb on - strand, within HP15_3668at 3865.388 kb on + strand, within HP15_3668at 3865.411 kb on + strand, within HP15_3668at 3865.460 kb on - strand, within HP15_3668at 3865.460 kb on - strand, within HP15_3668at 3865.460 kb on - strand, within HP15_3668at 3865.585 kb on - strand, within HP15_3668at 3865.593 kb on - strand, within HP15_3668at 3865.782 kb on + strand, within HP15_3668at 3865.791 kb on - strand, within HP15_3668at 3865.827 kb on - strand, within HP15_3668at 3865.867 kb on + strand, within HP15_3668at 3865.875 kb on - strand, within HP15_3668at 3865.875 kb on - strand, within HP15_3668at 3865.875 kb on - strand, within HP15_3668at 3865.875 kb on - strand, within HP15_3668at 3865.995 kb on + strand, within HP15_3668at 3866.424 kb on - strand, within HP15_3668at 3866.435 kb on + strand, within HP15_3668at 3866.443 kb on - strand, within HP15_3668at 3866.455 kb on + strand, within HP15_3668at 3866.463 kb on - strand, within HP15_3668at 3866.933 kb on + strandat 3866.999 kb on + strandat 3867.038 kb on - strand, within HP15_3669at 3867.094 kb on + strand, within HP15_3669at 3867.193 kb on + strand, within HP15_3669at 3867.209 kb on + strand, within HP15_3669at 3867.224 kb on + strand, within HP15_3669at 3867.232 kb on - strand, within HP15_3669at 3867.252 kb on + strand, within HP15_3669at 3867.347 kb on + strand, within HP15_3669at 3867.355 kb on - strand, within HP15_3669at 3867.355 kb on - strand, within HP15_3669at 3867.355 kb on - strand, within HP15_3669at 3867.522 kb on - strand, within HP15_3669at 3867.539 kb on - strand, within HP15_3669at 3867.646 kb on - strandat 3867.649 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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3,864,297 - -0.6
3,864,309 - +0.6
3,864,338 + +0.9
3,864,338 + -1.3
3,864,356 + -0.4
3,864,374 - HP15_3666 0.11 -0.4
3,864,469 - HP15_3666 0.43 -0.3
3,864,541 + HP15_3666 0.67 +1.2
3,864,656 - +0.4
3,864,656 - -0.8
3,864,656 - +0.0
3,864,670 + HP15_3667 0.11 +0.5
3,864,721 - HP15_3667 0.33 +1.2
3,864,726 + HP15_3667 0.35 -0.3
3,864,779 + HP15_3667 0.57 +0.6
3,864,915 + -0.3
3,864,923 - +0.7
3,865,019 - +0.1
3,865,047 - -0.6
3,865,148 - -0.7
3,865,166 - -0.9
3,865,270 + -1.4
3,865,364 + HP15_3668 0.11 -0.8
3,865,364 + HP15_3668 0.11 -1.9
3,865,372 - HP15_3668 0.12 -0.6
3,865,388 + HP15_3668 0.13 -1.7
3,865,411 + HP15_3668 0.14 -0.4
3,865,460 - HP15_3668 0.17 -0.3
3,865,460 - HP15_3668 0.17 -0.4
3,865,460 - HP15_3668 0.17 +1.2
3,865,585 - HP15_3668 0.26 +1.2
3,865,593 - HP15_3668 0.26 -1.2
3,865,782 + HP15_3668 0.39 -1.1
3,865,791 - HP15_3668 0.39 +0.4
3,865,827 - HP15_3668 0.42 -1.3
3,865,867 + HP15_3668 0.44 -1.7
3,865,875 - HP15_3668 0.45 -0.9
3,865,875 - HP15_3668 0.45 -0.8
3,865,875 - HP15_3668 0.45 +0.2
3,865,875 - HP15_3668 0.45 -0.5
3,865,995 + HP15_3668 0.53 -0.2
3,866,424 - HP15_3668 0.81 -0.8
3,866,435 + HP15_3668 0.82 -0.8
3,866,443 - HP15_3668 0.83 +1.2
3,866,455 + HP15_3668 0.84 -1.4
3,866,463 - HP15_3668 0.84 -2.5
3,866,933 + +0.5
3,866,999 + -1.1
3,867,038 - HP15_3669 0.10 +0.5
3,867,094 + HP15_3669 0.18 +1.2
3,867,193 + HP15_3669 0.31 +1.2
3,867,209 + HP15_3669 0.33 -0.2
3,867,224 + HP15_3669 0.35 -0.9
3,867,232 - HP15_3669 0.36 +0.3
3,867,252 + HP15_3669 0.38 -0.4
3,867,347 + HP15_3669 0.51 +0.1
3,867,355 - HP15_3669 0.52 -0.6
3,867,355 - HP15_3669 0.52 -2.3
3,867,355 - HP15_3669 0.52 +0.2
3,867,522 - HP15_3669 0.74 -0.5
3,867,539 - HP15_3669 0.76 -0.6
3,867,646 - -0.4
3,867,649 - +0.4

Or see this region's nucleotide sequence