Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3383 and HP15_3384 are separated by 41 nucleotides HP15_3384 and HP15_3385 are separated by 152 nucleotides HP15_3385 and HP15_3386 are separated by 18 nucleotides
HP15_3383: HP15_3383 - ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 3,551,562 to 3,552,857
_3383
HP15_3384: HP15_3384 - HIT (histidine triad) family protein, at 3,552,899 to 3,553,264
_3384
HP15_3385: HP15_3385 - phosphate uptake regulator, PhoU, at 3,553,417 to 3,554,154
_3385
HP15_3386: HP15_3386 - phosphate ABC transporter, ATPase subunit, at 3,554,173 to 3,555,051
_3386
Position (kb)
3552
3553
3554 Strain fitness (log2 ratio)
-2
-1
0
1 at 3552.801 kb on - strand at 3552.849 kb on - strand at 3552.979 kb on - strand, within HP15_3384 at 3552.980 kb on - strand, within HP15_3384 at 3553.086 kb on - strand, within HP15_3384 at 3553.151 kb on + strand, within HP15_3384 at 3553.220 kb on + strand, within HP15_3384 at 3553.220 kb on + strand, within HP15_3384 at 3553.228 kb on - strand at 3553.228 kb on - strand at 3553.278 kb on + strand at 3553.320 kb on + strand at 3553.361 kb on - strand at 3553.398 kb on + strand at 3553.410 kb on + strand at 3554.164 kb on + strand at 3554.172 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 3,552,801 - +1.1 3,552,849 - +1.5 3,552,979 - HP15_3384 0.22 +0.3 3,552,980 - HP15_3384 0.22 -1.4 3,553,086 - HP15_3384 0.51 -2.4 3,553,151 + HP15_3384 0.69 -0.8 3,553,220 + HP15_3384 0.88 -1.7 3,553,220 + HP15_3384 0.88 -2.6 3,553,228 - -1.9 3,553,228 - -1.4 3,553,278 + +0.2 3,553,320 + -0.4 3,553,361 - -0.2 3,553,398 + -0.8 3,553,410 + +1.3 3,554,164 + -1.0 3,554,172 - -0.4
Or see this region's nucleotide sequence