Strain Fitness in Marinobacter adhaerens HP15 around HP15_3013

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3011 and HP15_3012 are separated by 35 nucleotidesHP15_3012 and HP15_3013 are separated by 138 nucleotidesHP15_3013 and HP15_3014 are separated by 193 nucleotides HP15_3011: HP15_3011 - imidazole glycerol phosphate synthase subunit HisH, at 3,155,813 to 3,156,490 _3011 HP15_3012: HP15_3012 - imidazoleglycerol-phosphate dehydratase, at 3,156,526 to 3,157,119 _3012 HP15_3013: HP15_3013 - conserved hypothetical protein, at 3,157,258 to 3,157,719 _3013 HP15_3014: HP15_3014 - AsmA family protein, at 3,157,913 to 3,160,078 _3014 Position (kb) 3157 3158Strain fitness (log2 ratio) -1 0 1at 3156.504 kb on - strandat 3157.365 kb on - strand, within HP15_3013at 3157.376 kb on - strand, within HP15_3013at 3157.445 kb on + strand, within HP15_3013at 3157.521 kb on - strand, within HP15_3013at 3157.690 kb on + strandat 3157.722 kb on - strandat 3157.745 kb on - strandat 3157.834 kb on + strandat 3157.842 kb on - strandat 3157.850 kb on + strandat 3157.952 kb on - strandat 3158.046 kb on + strandat 3158.097 kb on + strandat 3158.111 kb on - strandat 3158.167 kb on + strand, within HP15_3014at 3158.205 kb on + strand, within HP15_3014at 3158.221 kb on - strand, within HP15_3014at 3158.428 kb on - strand, within HP15_3014

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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3,156,504 - -1.2
3,157,365 - HP15_3013 0.23 -1.5
3,157,376 - HP15_3013 0.26 +0.1
3,157,445 + HP15_3013 0.40 -1.3
3,157,521 - HP15_3013 0.57 -0.8
3,157,690 + -0.6
3,157,722 - -1.4
3,157,745 - +0.1
3,157,834 + -1.3
3,157,842 - +0.2
3,157,850 + +1.4
3,157,952 - +0.3
3,158,046 + +0.1
3,158,097 + +0.7
3,158,111 - -0.6
3,158,167 + HP15_3014 0.12 -0.2
3,158,205 + HP15_3014 0.13 -0.5
3,158,221 - HP15_3014 0.14 -0.6
3,158,428 - HP15_3014 0.24 +1.6

Or see this region's nucleotide sequence