Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2763 and HP15_2764 are separated by 112 nucleotides HP15_2764 and HP15_2765 are separated by 13 nucleotides HP15_2765 and HP15_2766 are separated by 16 nucleotides HP15_2766 and HP15_2767 are separated by 168 nucleotides HP15_2767 and HP15_2768 are separated by 49 nucleotides
HP15_2763: HP15_2763 - methyltransferase, UbiE/COQ5 family protein, at 2,917,115 to 2,917,747
_2763
HP15_2764: HP15_2764 - membrane protein, at 2,917,860 to 2,918,063
_2764
HP15_2765: HP15_2765 - conserved hypothetical protein, membrane, at 2,918,077 to 2,918,469
_2765
HP15_2766: HP15_2766 - sensory box/GGDEF family protein, at 2,918,486 to 2,919,520
_2766
HP15_2767: HP15_2767 - OmpA family protein-like protein, at 2,919,689 to 2,920,297
_2767
HP15_2768: HP15_2768 - membrane protein, at 2,920,347 to 2,922,854
_2768
Position (kb)
2918
2919
2920 Strain fitness (log2 ratio)
-2
-1
0
1 at 2917.574 kb on - strand, within HP15_2763 at 2917.596 kb on - strand, within HP15_2763 at 2917.657 kb on - strand, within HP15_2763 at 2917.657 kb on - strand, within HP15_2763 at 2917.751 kb on + strand at 2917.803 kb on - strand at 2917.837 kb on + strand at 2917.867 kb on + strand at 2917.875 kb on - strand at 2917.875 kb on - strand at 2917.913 kb on + strand, within HP15_2764 at 2917.986 kb on + strand, within HP15_2764 at 2917.986 kb on + strand, within HP15_2764 at 2917.986 kb on + strand, within HP15_2764 at 2918.066 kb on - strand at 2918.095 kb on - strand at 2918.102 kb on - strand at 2918.155 kb on + strand, within HP15_2765 at 2918.163 kb on - strand, within HP15_2765 at 2918.165 kb on + strand, within HP15_2765 at 2918.165 kb on + strand, within HP15_2765 at 2918.173 kb on - strand, within HP15_2765 at 2918.196 kb on + strand, within HP15_2765 at 2918.199 kb on - strand, within HP15_2765 at 2918.209 kb on - strand, within HP15_2765 at 2918.295 kb on + strand, within HP15_2765 at 2918.427 kb on - strand, within HP15_2765 at 2918.482 kb on - strand at 2918.536 kb on - strand at 2918.631 kb on + strand, within HP15_2766 at 2918.727 kb on + strand, within HP15_2766 at 2918.896 kb on + strand, within HP15_2766 at 2919.042 kb on - strand, within HP15_2766 at 2919.101 kb on + strand, within HP15_2766 at 2919.146 kb on + strand, within HP15_2766 at 2919.153 kb on + strand, within HP15_2766 at 2919.417 kb on + strand at 2919.436 kb on - strand at 2919.436 kb on - strand at 2919.484 kb on - strand at 2919.583 kb on - strand at 2919.750 kb on + strand, within HP15_2767 at 2919.758 kb on + strand, within HP15_2767 at 2919.766 kb on - strand, within HP15_2767 at 2919.947 kb on - strand, within HP15_2767 at 2919.990 kb on - strand, within HP15_2767 at 2920.048 kb on - strand, within HP15_2767 at 2920.133 kb on - strand, within HP15_2767 at 2920.230 kb on + strand, within HP15_2767 at 2920.268 kb on + strand at 2920.277 kb on - strand at 2920.430 kb on - strand at 2920.435 kb on - strand at 2920.446 kb on + strand at 2920.446 kb on + strand at 2920.446 kb on + strand at 2920.446 kb on + strand at 2920.454 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 2,917,574 - HP15_2763 0.73 -1.1 2,917,596 - HP15_2763 0.76 -0.7 2,917,657 - HP15_2763 0.86 +0.3 2,917,657 - HP15_2763 0.86 -0.4 2,917,751 + -0.4 2,917,803 - +0.9 2,917,837 + -1.3 2,917,867 + -1.0 2,917,875 - -1.1 2,917,875 - -0.2 2,917,913 + HP15_2764 0.26 -1.8 2,917,986 + HP15_2764 0.62 +1.0 2,917,986 + HP15_2764 0.62 -0.3 2,917,986 + HP15_2764 0.62 -0.9 2,918,066 - +0.1 2,918,095 - -0.6 2,918,102 - -0.7 2,918,155 + HP15_2765 0.20 -0.3 2,918,163 - HP15_2765 0.22 -0.1 2,918,165 + HP15_2765 0.22 -0.2 2,918,165 + HP15_2765 0.22 +0.4 2,918,173 - HP15_2765 0.24 +0.3 2,918,196 + HP15_2765 0.30 -0.7 2,918,199 - HP15_2765 0.31 -0.1 2,918,209 - HP15_2765 0.34 -0.1 2,918,295 + HP15_2765 0.55 +0.6 2,918,427 - HP15_2765 0.89 +0.3 2,918,482 - -0.7 2,918,536 - +0.3 2,918,631 + HP15_2766 0.14 +0.7 2,918,727 + HP15_2766 0.23 -0.8 2,918,896 + HP15_2766 0.40 +0.7 2,919,042 - HP15_2766 0.54 +0.8 2,919,101 + HP15_2766 0.59 +0.7 2,919,146 + HP15_2766 0.64 +0.7 2,919,153 + HP15_2766 0.64 -0.8 2,919,417 + -0.9 2,919,436 - -0.4 2,919,436 - +0.4 2,919,484 - -0.0 2,919,583 - -0.1 2,919,750 + HP15_2767 0.10 -0.3 2,919,758 + HP15_2767 0.11 +0.1 2,919,766 - HP15_2767 0.13 -1.1 2,919,947 - HP15_2767 0.42 -0.3 2,919,990 - HP15_2767 0.49 +0.6 2,920,048 - HP15_2767 0.59 +0.9 2,920,133 - HP15_2767 0.73 -1.0 2,920,230 + HP15_2767 0.89 -1.0 2,920,268 + +0.5 2,920,277 - +0.5 2,920,430 - +0.7 2,920,435 - -0.6 2,920,446 + +0.0 2,920,446 + -0.8 2,920,446 + -1.0 2,920,446 + -0.5 2,920,454 - +0.7
Or see this region's nucleotide sequence