Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2672 and HP15_2673 overlap by 4 nucleotides HP15_2673 and HP15_2674 are separated by 59 nucleotides HP15_2674 and HP15_2675 are separated by 55 nucleotides HP15_2675 and HP15_2676 are separated by 146 nucleotides
HP15_2672: HP15_2672 - conserved hypothetical protein, at 2,820,835 to 2,823,030
_2672
HP15_2673: HP15_2673 - DedA, at 2,823,027 to 2,823,761
_2673
HP15_2674: HP15_2674 - conserved hypothetical protein, at 2,823,821 to 2,824,060
_2674
HP15_2675: HP15_2675 - pseudouridine synthase, Rsu, at 2,824,116 to 2,824,814
_2675
HP15_2676: HP15_2676 - proton/sodium-glutamate symport protein, at 2,824,961 to 2,826,241
_2676
Position (kb)
2823
2824
2825 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2822.882 kb on + strand at 2822.890 kb on - strand at 2822.912 kb on + strand at 2822.920 kb on - strand at 2822.997 kb on + strand at 2823.066 kb on - strand at 2823.108 kb on + strand, within HP15_2673 at 2823.156 kb on + strand, within HP15_2673 at 2823.156 kb on + strand, within HP15_2673 at 2823.156 kb on + strand, within HP15_2673 at 2823.185 kb on + strand, within HP15_2673 at 2823.193 kb on - strand, within HP15_2673 at 2823.229 kb on - strand, within HP15_2673 at 2823.482 kb on + strand, within HP15_2673 at 2823.497 kb on + strand, within HP15_2673 at 2823.509 kb on - strand, within HP15_2673 at 2823.554 kb on + strand, within HP15_2673 at 2823.679 kb on + strand, within HP15_2673 at 2823.679 kb on - strand, within HP15_2673 at 2823.771 kb on - strand at 2823.808 kb on + strand at 2823.808 kb on + strand at 2823.838 kb on - strand at 2823.873 kb on + strand, within HP15_2674 at 2823.873 kb on + strand, within HP15_2674 at 2823.881 kb on - strand, within HP15_2674 at 2823.979 kb on - strand, within HP15_2674 at 2824.310 kb on + strand, within HP15_2675 at 2824.378 kb on + strand, within HP15_2675 at 2824.378 kb on + strand, within HP15_2675 at 2824.378 kb on + strand, within HP15_2675 at 2824.386 kb on - strand, within HP15_2675 at 2824.386 kb on - strand, within HP15_2675 at 2824.434 kb on + strand, within HP15_2675 at 2824.473 kb on - strand, within HP15_2675 at 2824.514 kb on + strand, within HP15_2675 at 2824.514 kb on + strand, within HP15_2675 at 2824.606 kb on - strand, within HP15_2675 at 2824.718 kb on - strand, within HP15_2675 at 2824.772 kb on - strand at 2824.806 kb on - strand at 2824.890 kb on - strand at 2824.977 kb on + strand at 2824.977 kb on + strand at 2824.985 kb on - strand at 2825.026 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 2,822,882 + -2.8 2,822,890 - +0.7 2,822,912 + +0.4 2,822,920 - -1.4 2,822,997 + +1.1 2,823,066 - -1.2 2,823,108 + HP15_2673 0.11 +0.8 2,823,156 + HP15_2673 0.18 -0.3 2,823,156 + HP15_2673 0.18 -0.3 2,823,156 + HP15_2673 0.18 +0.0 2,823,185 + HP15_2673 0.21 +1.3 2,823,193 - HP15_2673 0.23 -0.4 2,823,229 - HP15_2673 0.27 +1.1 2,823,482 + HP15_2673 0.62 -0.2 2,823,497 + HP15_2673 0.64 -0.6 2,823,509 - HP15_2673 0.66 +0.8 2,823,554 + HP15_2673 0.72 -0.9 2,823,679 + HP15_2673 0.89 +0.0 2,823,679 - HP15_2673 0.89 +0.1 2,823,771 - -0.2 2,823,808 + +0.0 2,823,808 + -0.6 2,823,838 - +0.7 2,823,873 + HP15_2674 0.22 +0.8 2,823,873 + HP15_2674 0.22 +0.4 2,823,881 - HP15_2674 0.25 +0.5 2,823,979 - HP15_2674 0.66 +0.8 2,824,310 + HP15_2675 0.28 -0.3 2,824,378 + HP15_2675 0.37 +0.5 2,824,378 + HP15_2675 0.37 -0.0 2,824,378 + HP15_2675 0.37 -0.2 2,824,386 - HP15_2675 0.39 +0.8 2,824,386 - HP15_2675 0.39 -0.2 2,824,434 + HP15_2675 0.45 +0.4 2,824,473 - HP15_2675 0.51 -0.5 2,824,514 + HP15_2675 0.57 -0.1 2,824,514 + HP15_2675 0.57 +0.5 2,824,606 - HP15_2675 0.70 +2.4 2,824,718 - HP15_2675 0.86 -1.8 2,824,772 - +2.4 2,824,806 - -1.2 2,824,890 - -0.7 2,824,977 + -0.4 2,824,977 + -0.6 2,824,985 - -1.5 2,825,026 + -1.2
Or see this region's nucleotide sequence