Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2350 and HP15_2351 are separated by 71 nucleotides HP15_2351 and HP15_2352 are separated by 284 nucleotides
HP15_2350: HP15_2350 - phosphoribosylaminoimidazole carboxylase ATPase subunit, at 2,473,434 to 2,474,552
_2350
HP15_2351: HP15_2351 - superoxide dismutase, Fe, at 2,474,624 to 2,475,202
_2351
HP15_2352: HP15_2352 - sensory box sensor/GGDEF/EAL domain protein, at 2,475,487 to 2,477,547
_2352
Position (kb)
2474
2475
2476 Strain fitness (log2 ratio)
-1
0
1 at 2474.546 kb on + strand at 2474.554 kb on - strand at 2475.244 kb on - strand at 2475.361 kb on + strand at 2475.427 kb on + strand at 2475.440 kb on - strand at 2475.578 kb on + strand at 2475.602 kb on + strand at 2475.610 kb on - strand at 2475.619 kb on + strand at 2475.665 kb on + strand at 2475.681 kb on + strand at 2475.687 kb on - strand at 2475.921 kb on + strand, within HP15_2352 at 2475.927 kb on - strand, within HP15_2352 at 2475.948 kb on - strand, within HP15_2352 at 2475.949 kb on + strand, within HP15_2352 at 2475.994 kb on + strand, within HP15_2352 at 2475.995 kb on - strand, within HP15_2352 at 2476.012 kb on + strand, within HP15_2352 at 2476.020 kb on - strand, within HP15_2352 at 2476.142 kb on + strand, within HP15_2352 at 2476.150 kb on - strand, within HP15_2352
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 2,474,546 + +0.2 2,474,554 - -0.1 2,475,244 - -1.5 2,475,361 + -0.6 2,475,427 + +0.5 2,475,440 - +0.0 2,475,578 + +0.2 2,475,602 + -0.5 2,475,610 - -0.8 2,475,619 + -0.5 2,475,665 + +0.3 2,475,681 + -1.0 2,475,687 - -0.3 2,475,921 + HP15_2352 0.21 +0.3 2,475,927 - HP15_2352 0.21 +0.0 2,475,948 - HP15_2352 0.22 +0.2 2,475,949 + HP15_2352 0.22 -0.1 2,475,994 + HP15_2352 0.25 +0.5 2,475,995 - HP15_2352 0.25 -0.9 2,476,012 + HP15_2352 0.25 +1.1 2,476,020 - HP15_2352 0.26 +0.5 2,476,142 + HP15_2352 0.32 -1.5 2,476,150 - HP15_2352 0.32 -1.0
Or see this region's nucleotide sequence