Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2221 and HP15_2222 are separated by 604 nucleotides HP15_2222 and HP15_2223 are separated by 3 nucleotides HP15_2223 and HP15_2224 overlap by 4 nucleotides
HP15_2221: HP15_2221 - pseudouridine synthase, RluA family, at 2,337,042 to 2,338,100
_2221
HP15_2222: HP15_2222 - ribonuclease, Rne/Rng family, at 2,338,705 to 2,341,929
_2222
HP15_2223: HP15_2223 - protein containing YgfB and YecA domain, at 2,341,933 to 2,342,475
_2223
HP15_2224: HP15_2224 - PHP C-terminal domain protein, at 2,342,472 to 2,343,326
_2224
Position (kb)
2338
2339
2340
2341
2342 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2337.760 kb on - strand, within HP15_2221 at 2337.913 kb on + strand, within HP15_2221 at 2337.921 kb on - strand, within HP15_2221 at 2337.953 kb on - strand, within HP15_2221 at 2337.985 kb on - strand, within HP15_2221 at 2338.113 kb on + strand at 2340.438 kb on - strand, within HP15_2222 at 2340.495 kb on + strand, within HP15_2222 at 2340.628 kb on - strand, within HP15_2222 at 2340.817 kb on + strand, within HP15_2222 at 2341.377 kb on + strand, within HP15_2222 at 2341.452 kb on - strand, within HP15_2222 at 2341.453 kb on + strand, within HP15_2222 at 2341.548 kb on + strand, within HP15_2222 at 2341.556 kb on - strand, within HP15_2222 at 2341.685 kb on - strand at 2341.695 kb on - strand at 2341.914 kb on + strand at 2341.991 kb on - strand, within HP15_2223 at 2342.061 kb on - strand, within HP15_2223 at 2342.130 kb on + strand, within HP15_2223 at 2342.200 kb on - strand, within HP15_2223 at 2342.348 kb on + strand, within HP15_2223 at 2342.356 kb on - strand, within HP15_2223 at 2342.364 kb on - strand, within HP15_2223 at 2342.477 kb on - strand at 2342.477 kb on - strand at 2342.530 kb on - strand at 2342.530 kb on - strand at 2342.530 kb on - strand at 2342.563 kb on + strand, within HP15_2224 at 2342.676 kb on - strand, within HP15_2224 at 2342.896 kb on + strand, within HP15_2224 at 2342.896 kb on + strand, within HP15_2224 at 2342.908 kb on + strand, within HP15_2224 at 2342.916 kb on - strand, within HP15_2224
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 2,337,760 - HP15_2221 0.68 -0.4 2,337,913 + HP15_2221 0.82 -0.3 2,337,921 - HP15_2221 0.83 -0.7 2,337,953 - HP15_2221 0.86 -0.1 2,337,985 - HP15_2221 0.89 -1.7 2,338,113 + +1.7 2,340,438 - HP15_2222 0.54 -4.0 2,340,495 + HP15_2222 0.56 -1.9 2,340,628 - HP15_2222 0.60 -2.2 2,340,817 + HP15_2222 0.65 -0.6 2,341,377 + HP15_2222 0.83 +0.4 2,341,452 - HP15_2222 0.85 -1.3 2,341,453 + HP15_2222 0.85 +0.7 2,341,548 + HP15_2222 0.88 -0.3 2,341,556 - HP15_2222 0.88 -2.0 2,341,685 - -0.7 2,341,695 - -0.0 2,341,914 + -0.3 2,341,991 - HP15_2223 0.11 +0.9 2,342,061 - HP15_2223 0.24 -0.7 2,342,130 + HP15_2223 0.36 +0.5 2,342,200 - HP15_2223 0.49 -1.3 2,342,348 + HP15_2223 0.76 -0.2 2,342,356 - HP15_2223 0.78 -0.7 2,342,364 - HP15_2223 0.79 +2.3 2,342,477 - +0.4 2,342,477 - +1.7 2,342,530 - +0.7 2,342,530 - -0.7 2,342,530 - +2.3 2,342,563 + HP15_2224 0.11 -0.5 2,342,676 - HP15_2224 0.24 -0.6 2,342,896 + HP15_2224 0.50 +0.2 2,342,896 + HP15_2224 0.50 +0.1 2,342,908 + HP15_2224 0.51 +0.4 2,342,916 - HP15_2224 0.52 +0.0
Or see this region's nucleotide sequence