Strain Fitness in Marinobacter adhaerens HP15 around HP15_2218

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2216 and HP15_2217 are separated by 100 nucleotidesHP15_2217 and HP15_2218 are separated by 138 nucleotidesHP15_2218 and HP15_2219 are separated by 4 nucleotides HP15_2216: HP15_2216 - ribosomal protein L32p, at 2,333,729 to 2,333,908 _2216 HP15_2217: HP15_2217 - protein containing DUF177, at 2,334,009 to 2,334,563 _2217 HP15_2218: HP15_2218 - Maf-like protein, at 2,334,702 to 2,335,310 _2218 HP15_2219: HP15_2219 - family S49 unassigned peptidase, at 2,335,315 to 2,336,358 _2219 Position (kb) 2334 2335 2336Strain fitness (log2 ratio) -2 -1 0 1at 2333.718 kb on - strandat 2334.605 kb on - strandat 2334.625 kb on + strandat 2334.818 kb on + strand, within HP15_2218at 2334.925 kb on - strand, within HP15_2218at 2334.950 kb on - strand, within HP15_2218at 2334.950 kb on - strand, within HP15_2218at 2334.950 kb on - strand, within HP15_2218at 2334.950 kb on - strand, within HP15_2218at 2335.000 kb on + strand, within HP15_2218at 2335.006 kb on + strand, within HP15_2218at 2335.016 kb on - strand, within HP15_2218at 2335.180 kb on + strand, within HP15_2218at 2335.180 kb on + strand, within HP15_2218at 2335.180 kb on + strand, within HP15_2218at 2335.190 kb on + strand, within HP15_2218at 2335.212 kb on + strand, within HP15_2218at 2335.417 kb on + strandat 2335.425 kb on + strand, within HP15_2219at 2335.450 kb on - strand, within HP15_2219at 2335.462 kb on + strand, within HP15_2219at 2335.480 kb on - strand, within HP15_2219at 2335.525 kb on - strand, within HP15_2219at 2335.573 kb on + strand, within HP15_2219at 2335.594 kb on - strand, within HP15_2219at 2335.686 kb on - strand, within HP15_2219at 2335.722 kb on + strand, within HP15_2219at 2335.722 kb on + strand, within HP15_2219at 2335.783 kb on - strand, within HP15_2219at 2335.798 kb on - strand, within HP15_2219at 2335.833 kb on - strand, within HP15_2219at 2335.930 kb on + strand, within HP15_2219at 2336.018 kb on + strand, within HP15_2219at 2336.023 kb on + strand, within HP15_2219at 2336.106 kb on + strand, within HP15_2219at 2336.114 kb on - strand, within HP15_2219at 2336.150 kb on - strand, within HP15_2219at 2336.191 kb on - strand, within HP15_2219at 2336.193 kb on + strand, within HP15_2219at 2336.193 kb on + strand, within HP15_2219at 2336.201 kb on - strand, within HP15_2219at 2336.201 kb on - strand, within HP15_2219

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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2,333,718 - +0.3
2,334,605 - -0.9
2,334,625 + -1.0
2,334,818 + HP15_2218 0.19 -0.1
2,334,925 - HP15_2218 0.37 -1.0
2,334,950 - HP15_2218 0.41 +0.5
2,334,950 - HP15_2218 0.41 -1.2
2,334,950 - HP15_2218 0.41 -1.1
2,334,950 - HP15_2218 0.41 +0.1
2,335,000 + HP15_2218 0.49 +0.1
2,335,006 + HP15_2218 0.50 -0.5
2,335,016 - HP15_2218 0.52 +1.1
2,335,180 + HP15_2218 0.78 +0.3
2,335,180 + HP15_2218 0.78 -0.5
2,335,180 + HP15_2218 0.78 -0.7
2,335,190 + HP15_2218 0.80 -0.7
2,335,212 + HP15_2218 0.84 -0.3
2,335,417 + +0.1
2,335,425 + HP15_2219 0.11 +0.7
2,335,450 - HP15_2219 0.13 +0.2
2,335,462 + HP15_2219 0.14 -0.3
2,335,480 - HP15_2219 0.16 +0.6
2,335,525 - HP15_2219 0.20 -0.3
2,335,573 + HP15_2219 0.25 +0.7
2,335,594 - HP15_2219 0.27 +0.2
2,335,686 - HP15_2219 0.36 -0.6
2,335,722 + HP15_2219 0.39 +0.3
2,335,722 + HP15_2219 0.39 -0.8
2,335,783 - HP15_2219 0.45 +0.1
2,335,798 - HP15_2219 0.46 -1.2
2,335,833 - HP15_2219 0.50 -0.9
2,335,930 + HP15_2219 0.59 -1.8
2,336,018 + HP15_2219 0.67 +0.7
2,336,023 + HP15_2219 0.68 +0.7
2,336,106 + HP15_2219 0.76 +0.7
2,336,114 - HP15_2219 0.77 -1.9
2,336,150 - HP15_2219 0.80 +0.7
2,336,191 - HP15_2219 0.84 +0.1
2,336,193 + HP15_2219 0.84 +0.1
2,336,193 + HP15_2219 0.84 -1.2
2,336,201 - HP15_2219 0.85 -0.1
2,336,201 - HP15_2219 0.85 +0.1

Or see this region's nucleotide sequence