Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2216 and HP15_2217 are separated by 100 nucleotides HP15_2217 and HP15_2218 are separated by 138 nucleotides HP15_2218 and HP15_2219 are separated by 4 nucleotides
HP15_2216: HP15_2216 - ribosomal protein L32p, at 2,333,729 to 2,333,908
_2216
HP15_2217: HP15_2217 - protein containing DUF177, at 2,334,009 to 2,334,563
_2217
HP15_2218: HP15_2218 - Maf-like protein, at 2,334,702 to 2,335,310
_2218
HP15_2219: HP15_2219 - family S49 unassigned peptidase, at 2,335,315 to 2,336,358
_2219
Position (kb)
2334
2335
2336 Strain fitness (log2 ratio)
-2
-1
0
1 at 2333.718 kb on - strand at 2334.605 kb on - strand at 2334.625 kb on + strand at 2334.818 kb on + strand, within HP15_2218 at 2334.925 kb on - strand, within HP15_2218 at 2334.950 kb on - strand, within HP15_2218 at 2334.950 kb on - strand, within HP15_2218 at 2334.950 kb on - strand, within HP15_2218 at 2334.950 kb on - strand, within HP15_2218 at 2335.000 kb on + strand, within HP15_2218 at 2335.006 kb on + strand, within HP15_2218 at 2335.016 kb on - strand, within HP15_2218 at 2335.180 kb on + strand, within HP15_2218 at 2335.180 kb on + strand, within HP15_2218 at 2335.180 kb on + strand, within HP15_2218 at 2335.190 kb on + strand, within HP15_2218 at 2335.212 kb on + strand, within HP15_2218 at 2335.417 kb on + strand at 2335.425 kb on + strand, within HP15_2219 at 2335.450 kb on - strand, within HP15_2219 at 2335.462 kb on + strand, within HP15_2219 at 2335.480 kb on - strand, within HP15_2219 at 2335.525 kb on - strand, within HP15_2219 at 2335.573 kb on + strand, within HP15_2219 at 2335.594 kb on - strand, within HP15_2219 at 2335.686 kb on - strand, within HP15_2219 at 2335.722 kb on + strand, within HP15_2219 at 2335.722 kb on + strand, within HP15_2219 at 2335.783 kb on - strand, within HP15_2219 at 2335.798 kb on - strand, within HP15_2219 at 2335.833 kb on - strand, within HP15_2219 at 2335.930 kb on + strand, within HP15_2219 at 2336.018 kb on + strand, within HP15_2219 at 2336.023 kb on + strand, within HP15_2219 at 2336.106 kb on + strand, within HP15_2219 at 2336.114 kb on - strand, within HP15_2219 at 2336.150 kb on - strand, within HP15_2219 at 2336.191 kb on - strand, within HP15_2219 at 2336.193 kb on + strand, within HP15_2219 at 2336.193 kb on + strand, within HP15_2219 at 2336.201 kb on - strand, within HP15_2219 at 2336.201 kb on - strand, within HP15_2219
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 2,333,718 - +0.3 2,334,605 - -0.9 2,334,625 + -1.0 2,334,818 + HP15_2218 0.19 -0.1 2,334,925 - HP15_2218 0.37 -1.0 2,334,950 - HP15_2218 0.41 +0.5 2,334,950 - HP15_2218 0.41 -1.2 2,334,950 - HP15_2218 0.41 -1.1 2,334,950 - HP15_2218 0.41 +0.1 2,335,000 + HP15_2218 0.49 +0.1 2,335,006 + HP15_2218 0.50 -0.5 2,335,016 - HP15_2218 0.52 +1.1 2,335,180 + HP15_2218 0.78 +0.3 2,335,180 + HP15_2218 0.78 -0.5 2,335,180 + HP15_2218 0.78 -0.7 2,335,190 + HP15_2218 0.80 -0.7 2,335,212 + HP15_2218 0.84 -0.3 2,335,417 + +0.1 2,335,425 + HP15_2219 0.11 +0.7 2,335,450 - HP15_2219 0.13 +0.2 2,335,462 + HP15_2219 0.14 -0.3 2,335,480 - HP15_2219 0.16 +0.6 2,335,525 - HP15_2219 0.20 -0.3 2,335,573 + HP15_2219 0.25 +0.7 2,335,594 - HP15_2219 0.27 +0.2 2,335,686 - HP15_2219 0.36 -0.6 2,335,722 + HP15_2219 0.39 +0.3 2,335,722 + HP15_2219 0.39 -0.8 2,335,783 - HP15_2219 0.45 +0.1 2,335,798 - HP15_2219 0.46 -1.2 2,335,833 - HP15_2219 0.50 -0.9 2,335,930 + HP15_2219 0.59 -1.8 2,336,018 + HP15_2219 0.67 +0.7 2,336,023 + HP15_2219 0.68 +0.7 2,336,106 + HP15_2219 0.76 +0.7 2,336,114 - HP15_2219 0.77 -1.9 2,336,150 - HP15_2219 0.80 +0.7 2,336,191 - HP15_2219 0.84 +0.1 2,336,193 + HP15_2219 0.84 +0.1 2,336,193 + HP15_2219 0.84 -1.2 2,336,201 - HP15_2219 0.85 -0.1 2,336,201 - HP15_2219 0.85 +0.1
Or see this region's nucleotide sequence