Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2052 and HP15_2053 are separated by 103 nucleotides HP15_2053 and HP15_2054 are separated by 316 nucleotides HP15_2054 and HP15_2055 are separated by 92 nucleotides
HP15_2052: HP15_2052 - exodeoxyribonuclease VII large subunit, at 2,151,652 to 2,153,040
_2052
HP15_2053: HP15_2053 - PrpE protein, at 2,153,144 to 2,155,018
_2053
HP15_2054: HP15_2054 - cold shock, CspA, at 2,155,335 to 2,155,544
_2054
HP15_2055: HP15_2055 - 2-isopropylmalate synthase, at 2,155,637 to 2,157,331
_2055
Position (kb)
2153
2154
2155
2156 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2152.194 kb on + strand, within HP15_2052 at 2152.266 kb on - strand, within HP15_2052 at 2152.318 kb on - strand, within HP15_2052 at 2152.408 kb on - strand, within HP15_2052 at 2152.493 kb on + strand, within HP15_2052 at 2152.493 kb on + strand, within HP15_2052 at 2152.501 kb on - strand, within HP15_2052 at 2152.501 kb on - strand, within HP15_2052 at 2152.527 kb on + strand, within HP15_2052 at 2152.577 kb on - strand, within HP15_2052 at 2152.648 kb on - strand, within HP15_2052 at 2152.811 kb on + strand, within HP15_2052 at 2152.811 kb on + strand, within HP15_2052 at 2152.811 kb on + strand, within HP15_2052 at 2152.890 kb on + strand, within HP15_2052 at 2152.945 kb on - strand at 2152.952 kb on - strand at 2152.952 kb on - strand at 2152.952 kb on - strand at 2153.034 kb on + strand at 2153.116 kb on - strand at 2153.134 kb on + strand at 2153.142 kb on - strand at 2153.387 kb on - strand, within HP15_2053 at 2153.387 kb on - strand, within HP15_2053 at 2153.469 kb on - strand, within HP15_2053 at 2153.701 kb on - strand, within HP15_2053 at 2153.743 kb on + strand, within HP15_2053 at 2153.879 kb on - strand, within HP15_2053 at 2153.885 kb on + strand, within HP15_2053 at 2153.886 kb on - strand, within HP15_2053 at 2153.886 kb on - strand, within HP15_2053 at 2153.931 kb on - strand, within HP15_2053 at 2153.979 kb on + strand, within HP15_2053 at 2154.015 kb on - strand, within HP15_2053 at 2154.131 kb on - strand, within HP15_2053 at 2154.250 kb on - strand, within HP15_2053 at 2154.293 kb on + strand, within HP15_2053 at 2154.394 kb on + strand, within HP15_2053 at 2154.404 kb on - strand, within HP15_2053 at 2154.404 kb on - strand, within HP15_2053 at 2154.825 kb on - strand, within HP15_2053 at 2154.887 kb on + strand at 2154.895 kb on - strand at 2154.974 kb on - strand at 2155.366 kb on + strand, within HP15_2054 at 2155.366 kb on + strand, within HP15_2054 at 2155.384 kb on - strand, within HP15_2054 at 2155.466 kb on + strand, within HP15_2054 at 2155.568 kb on - strand at 2155.700 kb on - strand at 2155.704 kb on + strand at 2155.712 kb on - strand at 2155.786 kb on + strand at 2155.799 kb on - strand at 2155.818 kb on + strand, within HP15_2055 at 2155.903 kb on - strand, within HP15_2055 at 2155.920 kb on - strand, within HP15_2055
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 2,152,194 + HP15_2052 0.39 -0.3 2,152,266 - HP15_2052 0.44 -0.2 2,152,318 - HP15_2052 0.48 +0.6 2,152,408 - HP15_2052 0.54 +0.3 2,152,493 + HP15_2052 0.61 -0.9 2,152,493 + HP15_2052 0.61 -1.9 2,152,501 - HP15_2052 0.61 +0.3 2,152,501 - HP15_2052 0.61 -0.4 2,152,527 + HP15_2052 0.63 +0.3 2,152,577 - HP15_2052 0.67 +0.8 2,152,648 - HP15_2052 0.72 +1.6 2,152,811 + HP15_2052 0.83 -1.0 2,152,811 + HP15_2052 0.83 +0.7 2,152,811 + HP15_2052 0.83 -0.6 2,152,890 + HP15_2052 0.89 -0.2 2,152,945 - +0.3 2,152,952 - +0.4 2,152,952 - +0.9 2,152,952 - -0.6 2,153,034 + -0.3 2,153,116 - -0.7 2,153,134 + +0.6 2,153,142 - -0.6 2,153,387 - HP15_2053 0.13 -2.2 2,153,387 - HP15_2053 0.13 -0.4 2,153,469 - HP15_2053 0.17 -0.6 2,153,701 - HP15_2053 0.30 -0.7 2,153,743 + HP15_2053 0.32 -0.1 2,153,879 - HP15_2053 0.39 -2.2 2,153,885 + HP15_2053 0.40 -0.5 2,153,886 - HP15_2053 0.40 +0.6 2,153,886 - HP15_2053 0.40 -0.1 2,153,931 - HP15_2053 0.42 +1.5 2,153,979 + HP15_2053 0.45 -0.9 2,154,015 - HP15_2053 0.46 -1.0 2,154,131 - HP15_2053 0.53 +0.6 2,154,250 - HP15_2053 0.59 -2.0 2,154,293 + HP15_2053 0.61 -0.2 2,154,394 + HP15_2053 0.67 -0.5 2,154,404 - HP15_2053 0.67 +0.3 2,154,404 - HP15_2053 0.67 -0.5 2,154,825 - HP15_2053 0.90 -0.0 2,154,887 + +0.1 2,154,895 - -0.1 2,154,974 - +1.2 2,155,366 + HP15_2054 0.15 -1.2 2,155,366 + HP15_2054 0.15 -0.7 2,155,384 - HP15_2054 0.23 +0.6 2,155,466 + HP15_2054 0.62 -0.5 2,155,568 - +0.6 2,155,700 - -0.4 2,155,704 + +0.4 2,155,712 - -0.4 2,155,786 + -0.1 2,155,799 - +0.2 2,155,818 + HP15_2055 0.11 +2.9 2,155,903 - HP15_2055 0.16 -1.2 2,155,920 - HP15_2055 0.17 +1.3
Or see this region's nucleotide sequence