Strain Fitness in Marinobacter adhaerens HP15 around HP15_1977

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1974 and HP15_1975 overlap by 4 nucleotidesHP15_1975 and HP15_1976 are separated by 107 nucleotidesHP15_1976 and HP15_1977 are separated by 15 nucleotidesHP15_1977 and HP15_1978 are separated by 517 nucleotides HP15_1974: HP15_1974 - hypothetical protein, at 2,090,986 to 2,091,447 _1974 HP15_1975: HP15_1975 - conserved hypothetical protein, at 2,091,444 to 2,091,581 _1975 HP15_1976: HP15_1976 - hypothetical protein, at 2,091,689 to 2,092,069 _1976 HP15_1977: HP15_1977 - hypothetical protein, at 2,092,085 to 2,092,240 _1977 HP15_1978: HP15_1978 - phage antitermination Q type 1 family-like protein, at 2,092,758 to 2,093,078 _1978 Position (kb) 2092 2093Strain fitness (log2 ratio) -2 -1 0 1 2at 2091.104 kb on + strand, within HP15_1974at 2091.241 kb on - strand, within HP15_1974at 2091.252 kb on + strand, within HP15_1974at 2091.463 kb on + strand, within HP15_1975at 2091.471 kb on - strand, within HP15_1975at 2091.615 kb on + strandat 2091.660 kb on + strandat 2091.665 kb on + strandat 2091.673 kb on - strandat 2091.738 kb on + strand, within HP15_1976at 2091.738 kb on + strand, within HP15_1976at 2091.738 kb on + strand, within HP15_1976at 2091.787 kb on + strand, within HP15_1976at 2091.795 kb on - strand, within HP15_1976at 2091.795 kb on - strand, within HP15_1976at 2091.795 kb on - strand, within HP15_1976at 2091.795 kb on - strand, within HP15_1976at 2091.807 kb on + strand, within HP15_1976at 2091.975 kb on + strand, within HP15_1976at 2091.975 kb on + strand, within HP15_1976at 2091.975 kb on + strand, within HP15_1976at 2091.976 kb on - strand, within HP15_1976at 2091.983 kb on - strand, within HP15_1976at 2092.016 kb on - strand, within HP15_1976at 2092.018 kb on + strand, within HP15_1976at 2092.018 kb on + strand, within HP15_1976at 2092.088 kb on - strandat 2092.198 kb on - strand, within HP15_1977at 2092.199 kb on - strand, within HP15_1977at 2092.445 kb on + strandat 2092.453 kb on - strandat 2092.594 kb on + strandat 2092.699 kb on + strandat 2092.705 kb on + strandat 2092.713 kb on - strandat 2092.713 kb on - strandat 2092.779 kb on + strandat 2092.785 kb on + strandat 2092.787 kb on + strandat 2092.795 kb on - strand, within HP15_1978at 2092.795 kb on - strand, within HP15_1978at 2092.901 kb on - strand, within HP15_1978at 2092.901 kb on - strand, within HP15_1978at 2092.972 kb on - strand, within HP15_1978at 2093.041 kb on - strand, within HP15_1978at 2093.046 kb on + strand, within HP15_1978at 2093.046 kb on + strand, within HP15_1978at 2093.047 kb on - strandat 2093.049 kb on - strandat 2093.114 kb on + strandat 2093.115 kb on + strandat 2093.207 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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2,091,104 + HP15_1974 0.26 +1.6
2,091,241 - HP15_1974 0.55 -0.5
2,091,252 + HP15_1974 0.58 +0.7
2,091,463 + HP15_1975 0.14 -1.4
2,091,471 - HP15_1975 0.20 +0.5
2,091,615 + -0.3
2,091,660 + -0.4
2,091,665 + -1.0
2,091,673 - +1.0
2,091,738 + HP15_1976 0.13 -0.0
2,091,738 + HP15_1976 0.13 +1.1
2,091,738 + HP15_1976 0.13 +0.6
2,091,787 + HP15_1976 0.26 -0.5
2,091,795 - HP15_1976 0.28 -1.4
2,091,795 - HP15_1976 0.28 -1.3
2,091,795 - HP15_1976 0.28 +0.2
2,091,795 - HP15_1976 0.28 +0.2
2,091,807 + HP15_1976 0.31 -1.8
2,091,975 + HP15_1976 0.75 +0.3
2,091,975 + HP15_1976 0.75 -0.4
2,091,975 + HP15_1976 0.75 +0.6
2,091,976 - HP15_1976 0.75 -0.2
2,091,983 - HP15_1976 0.77 +0.6
2,092,016 - HP15_1976 0.86 +0.6
2,092,018 + HP15_1976 0.86 -0.2
2,092,018 + HP15_1976 0.86 +0.1
2,092,088 - -0.4
2,092,198 - HP15_1977 0.72 -0.6
2,092,199 - HP15_1977 0.73 -0.5
2,092,445 + -0.6
2,092,453 - +0.2
2,092,594 + +0.7
2,092,699 + +0.8
2,092,705 + -1.1
2,092,713 - -0.5
2,092,713 - -0.2
2,092,779 + -0.8
2,092,785 + +1.8
2,092,787 + +0.3
2,092,795 - HP15_1978 0.12 +0.5
2,092,795 - HP15_1978 0.12 -0.1
2,092,901 - HP15_1978 0.45 +0.9
2,092,901 - HP15_1978 0.45 +0.0
2,092,972 - HP15_1978 0.67 +0.9
2,093,041 - HP15_1978 0.88 -0.6
2,093,046 + HP15_1978 0.90 +0.2
2,093,046 + HP15_1978 0.90 +0.6
2,093,047 - -0.4
2,093,049 - +0.6
2,093,114 + +0.0
2,093,115 + -0.4
2,093,207 - +0.3

Or see this region's nucleotide sequence