Strain Fitness in Marinobacter adhaerens HP15 around HP15_174

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_172 and HP15_173 overlap by 17 nucleotidesHP15_173 and HP15_174 are separated by 202 nucleotidesHP15_174 and HP15_175 are separated by 60 nucleotidesHP15_175 and HP15_176 are separated by 175 nucleotides HP15_172: HP15_172 - protein-S-isoprenylcysteine methyltransferase, at 164,364 to 165,032 _172 HP15_173: HP15_173 - secreted protein, at 165,016 to 165,189 _173 HP15_174: HP15_174 - conserved hypothetical protein, at 165,392 to 166,684 _174 HP15_175: HP15_175 - conserved hypothetical protein, at 166,745 to 167,203 _175 HP15_176: HP15_176 - uncharacterized conserved protein, at 167,379 to 167,765 _176 Position (kb) 165 166 167Strain fitness (log2 ratio) -2 -1 0 1 2at 164.432 kb on - strand, within HP15_172at 164.514 kb on - strand, within HP15_172at 164.543 kb on + strand, within HP15_172at 164.543 kb on + strand, within HP15_172at 164.543 kb on + strand, within HP15_172at 164.543 kb on + strand, within HP15_172at 164.543 kb on + strand, within HP15_172at 164.551 kb on - strand, within HP15_172at 164.551 kb on - strand, within HP15_172at 164.561 kb on - strand, within HP15_172at 164.656 kb on + strand, within HP15_172at 164.664 kb on - strand, within HP15_172at 164.675 kb on - strand, within HP15_172at 164.703 kb on + strand, within HP15_172at 164.759 kb on - strand, within HP15_172at 164.787 kb on + strand, within HP15_172at 164.787 kb on + strand, within HP15_172at 164.820 kb on + strand, within HP15_172at 164.939 kb on - strand, within HP15_172at 165.036 kb on + strand, within HP15_173at 165.044 kb on - strand, within HP15_173at 165.044 kb on - strand, within HP15_173at 165.057 kb on + strand, within HP15_173at 165.076 kb on + strand, within HP15_173at 165.084 kb on - strand, within HP15_173at 165.096 kb on - strand, within HP15_173at 165.135 kb on - strand, within HP15_173at 165.135 kb on - strand, within HP15_173at 165.167 kb on + strand, within HP15_173at 165.174 kb on + strandat 165.184 kb on + strandat 165.184 kb on + strandat 165.185 kb on + strandat 165.193 kb on - strandat 165.193 kb on - strandat 165.298 kb on - strandat 165.305 kb on - strandat 165.311 kb on - strandat 165.377 kb on + strandat 165.425 kb on + strandat 165.433 kb on - strandat 165.478 kb on - strandat 165.479 kb on - strandat 165.551 kb on - strand, within HP15_174at 165.646 kb on + strand, within HP15_174at 165.676 kb on - strand, within HP15_174at 165.676 kb on - strand, within HP15_174at 165.712 kb on + strand, within HP15_174at 165.764 kb on - strand, within HP15_174at 165.809 kb on + strand, within HP15_174at 165.809 kb on + strand, within HP15_174at 165.817 kb on - strand, within HP15_174at 165.822 kb on - strand, within HP15_174at 165.834 kb on + strand, within HP15_174at 165.842 kb on - strand, within HP15_174at 165.842 kb on - strand, within HP15_174at 165.862 kb on + strand, within HP15_174at 165.867 kb on + strand, within HP15_174at 165.933 kb on + strand, within HP15_174at 165.962 kb on + strand, within HP15_174at 166.039 kb on + strand, within HP15_174at 166.046 kb on - strand, within HP15_174at 166.069 kb on + strand, within HP15_174at 166.102 kb on + strand, within HP15_174at 166.121 kb on + strand, within HP15_174at 166.121 kb on + strand, within HP15_174at 166.121 kb on + strand, within HP15_174at 166.129 kb on - strand, within HP15_174at 166.129 kb on - strand, within HP15_174at 166.232 kb on - strand, within HP15_174at 166.271 kb on + strand, within HP15_174at 166.271 kb on + strand, within HP15_174at 166.272 kb on + strand, within HP15_174at 166.280 kb on - strand, within HP15_174at 166.287 kb on + strand, within HP15_174at 166.287 kb on + strand, within HP15_174at 166.295 kb on - strand, within HP15_174at 166.297 kb on + strand, within HP15_174at 166.326 kb on + strand, within HP15_174at 166.329 kb on - strand, within HP15_174at 166.329 kb on - strand, within HP15_174at 166.334 kb on - strand, within HP15_174at 166.334 kb on - strand, within HP15_174at 166.339 kb on - strand, within HP15_174at 166.370 kb on + strand, within HP15_174at 166.372 kb on + strand, within HP15_174at 166.535 kb on - strand, within HP15_174at 166.597 kb on - strandat 166.624 kb on + strandat 166.671 kb on + strandat 166.671 kb on + strandat 166.671 kb on + strandat 166.679 kb on - strandat 166.679 kb on - strandat 166.722 kb on - strandat 166.722 kb on - strandat 166.881 kb on - strand, within HP15_175at 166.911 kb on - strand, within HP15_175at 166.943 kb on - strand, within HP15_175at 166.945 kb on + strand, within HP15_175at 166.988 kb on + strand, within HP15_175at 166.996 kb on + strand, within HP15_175at 166.996 kb on - strand, within HP15_175at 167.004 kb on - strand, within HP15_175at 167.008 kb on - strand, within HP15_175at 167.011 kb on + strand, within HP15_175at 167.149 kb on - strand, within HP15_175at 167.189 kb on + strandat 167.190 kb on - strandat 167.301 kb on + strandat 167.315 kb on - strandat 167.320 kb on - strandat 167.404 kb on - strandat 167.410 kb on + strandat 167.410 kb on + strandat 167.410 kb on + strandat 167.410 kb on + strandat 167.411 kb on - strandat 167.418 kb on - strand, within HP15_176at 167.418 kb on - strand, within HP15_176at 167.418 kb on - strand, within HP15_176at 167.440 kb on - strand, within HP15_176at 167.489 kb on + strand, within HP15_176at 167.489 kb on + strand, within HP15_176at 167.489 kb on + strand, within HP15_176at 167.489 kb on + strand, within HP15_176at 167.489 kb on + strand, within HP15_176at 167.489 kb on + strand, within HP15_176at 167.497 kb on - strand, within HP15_176at 167.497 kb on - strand, within HP15_176at 167.500 kb on + strand, within HP15_176at 167.582 kb on - strand, within HP15_176at 167.614 kb on + strand, within HP15_176at 167.615 kb on + strand, within HP15_176at 167.679 kb on + strand, within HP15_176

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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164,432 - HP15_172 0.10 +0.6
164,514 - HP15_172 0.22 +0.4
164,543 + HP15_172 0.27 +0.3
164,543 + HP15_172 0.27 +0.2
164,543 + HP15_172 0.27 -0.6
164,543 + HP15_172 0.27 -0.2
164,543 + HP15_172 0.27 -0.3
164,551 - HP15_172 0.28 -0.3
164,551 - HP15_172 0.28 -0.1
164,561 - HP15_172 0.29 -1.3
164,656 + HP15_172 0.44 +0.0
164,664 - HP15_172 0.45 -0.8
164,675 - HP15_172 0.46 +0.4
164,703 + HP15_172 0.51 -0.2
164,759 - HP15_172 0.59 -0.7
164,787 + HP15_172 0.63 +0.6
164,787 + HP15_172 0.63 +1.0
164,820 + HP15_172 0.68 -0.5
164,939 - HP15_172 0.86 -0.4
165,036 + HP15_173 0.11 +0.2
165,044 - HP15_173 0.16 -0.9
165,044 - HP15_173 0.16 +1.6
165,057 + HP15_173 0.24 +0.2
165,076 + HP15_173 0.34 -0.6
165,084 - HP15_173 0.39 +0.2
165,096 - HP15_173 0.46 +1.2
165,135 - HP15_173 0.68 -0.2
165,135 - HP15_173 0.68 +1.3
165,167 + HP15_173 0.87 -0.5
165,174 + -1.0
165,184 + -0.5
165,184 + +1.0
165,185 + +0.3
165,193 - +0.3
165,193 - -0.8
165,298 - +0.6
165,305 - +0.5
165,311 - -0.7
165,377 + +0.2
165,425 + -0.1
165,433 - +0.1
165,478 - -2.0
165,479 - -0.6
165,551 - HP15_174 0.12 +1.6
165,646 + HP15_174 0.20 +0.0
165,676 - HP15_174 0.22 -0.0
165,676 - HP15_174 0.22 +0.1
165,712 + HP15_174 0.25 -0.0
165,764 - HP15_174 0.29 -0.2
165,809 + HP15_174 0.32 -0.5
165,809 + HP15_174 0.32 -0.2
165,817 - HP15_174 0.33 +1.6
165,822 - HP15_174 0.33 +2.6
165,834 + HP15_174 0.34 -0.3
165,842 - HP15_174 0.35 +0.2
165,842 - HP15_174 0.35 +0.9
165,862 + HP15_174 0.36 -0.0
165,867 + HP15_174 0.37 -0.2
165,933 + HP15_174 0.42 +0.3
165,962 + HP15_174 0.44 +0.2
166,039 + HP15_174 0.50 +0.2
166,046 - HP15_174 0.51 -1.0
166,069 + HP15_174 0.52 +0.4
166,102 + HP15_174 0.55 +0.4
166,121 + HP15_174 0.56 +0.9
166,121 + HP15_174 0.56 +0.2
166,121 + HP15_174 0.56 -1.8
166,129 - HP15_174 0.57 +1.1
166,129 - HP15_174 0.57 -1.0
166,232 - HP15_174 0.65 -0.3
166,271 + HP15_174 0.68 +0.4
166,271 + HP15_174 0.68 -0.6
166,272 + HP15_174 0.68 +0.4
166,280 - HP15_174 0.69 +0.1
166,287 + HP15_174 0.69 +1.4
166,287 + HP15_174 0.69 +0.3
166,295 - HP15_174 0.70 -0.1
166,297 + HP15_174 0.70 -1.1
166,326 + HP15_174 0.72 +0.9
166,329 - HP15_174 0.72 +0.6
166,329 - HP15_174 0.72 -0.7
166,334 - HP15_174 0.73 +1.0
166,334 - HP15_174 0.73 -1.0
166,339 - HP15_174 0.73 -0.3
166,370 + HP15_174 0.76 -1.2
166,372 + HP15_174 0.76 +0.7
166,535 - HP15_174 0.88 -0.0
166,597 - +0.3
166,624 + +0.6
166,671 + +1.0
166,671 + +0.1
166,671 + +1.0
166,679 - +1.0
166,679 - -0.1
166,722 - -0.2
166,722 - -1.0
166,881 - HP15_175 0.30 +0.4
166,911 - HP15_175 0.36 -0.7
166,943 - HP15_175 0.43 -0.2
166,945 + HP15_175 0.44 -1.0
166,988 + HP15_175 0.53 -0.8
166,996 + HP15_175 0.55 -1.6
166,996 - HP15_175 0.55 +2.3
167,004 - HP15_175 0.56 -0.7
167,008 - HP15_175 0.57 -0.1
167,011 + HP15_175 0.58 -0.5
167,149 - HP15_175 0.88 -0.3
167,189 + -0.5
167,190 - -0.1
167,301 + -1.3
167,315 - +0.9
167,320 - -0.1
167,404 - +2.0
167,410 + +0.2
167,410 + +0.3
167,410 + -0.7
167,410 + +1.0
167,411 - +0.5
167,418 - HP15_176 0.10 +0.6
167,418 - HP15_176 0.10 +0.1
167,418 - HP15_176 0.10 -0.6
167,440 - HP15_176 0.16 -0.7
167,489 + HP15_176 0.28 -0.2
167,489 + HP15_176 0.28 +0.5
167,489 + HP15_176 0.28 -1.0
167,489 + HP15_176 0.28 +2.0
167,489 + HP15_176 0.28 +0.1
167,489 + HP15_176 0.28 -0.3
167,497 - HP15_176 0.30 -0.8
167,497 - HP15_176 0.30 -0.0
167,500 + HP15_176 0.31 -0.6
167,582 - HP15_176 0.52 -0.0
167,614 + HP15_176 0.61 -0.3
167,615 + HP15_176 0.61 -1.2
167,679 + HP15_176 0.78 +0.3

Or see this region's nucleotide sequence