Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1430 and HP15_1431 are separated by 624 nucleotides HP15_1431 and HP15_1432 are separated by 65 nucleotides HP15_1432 and HP15_1433 are separated by 71 nucleotides HP15_1433 and HP15_1434 are separated by 1 nucleotides
HP15_1430: HP15_1430 - glutathione S-transferase family protein, at 1,510,454 to 1,511,050
_1430
HP15_1431: HP15_1431 - zinc finger, C4 DksA/TraR-type, at 1,511,675 to 1,511,974
_1431
HP15_1432: HP15_1432 - conserved hypothetical protein, membrane, at 1,512,040 to 1,512,318
_1432
HP15_1433: HP15_1433 - conserved hypothetical protein, secreted, at 1,512,390 to 1,512,887
_1433
HP15_1434: HP15_1434 - conserved hypothetical protein, at 1,512,889 to 1,513,209
_1434
Position (kb)
1511
1512 Strain fitness (log2 ratio)
-2
-1
0
1 at 1510.787 kb on + strand, within HP15_1430 at 1510.787 kb on + strand, within HP15_1430 at 1510.816 kb on + strand, within HP15_1430 at 1510.816 kb on + strand, within HP15_1430 at 1510.816 kb on + strand, within HP15_1430 at 1510.816 kb on + strand, within HP15_1430 at 1510.824 kb on - strand, within HP15_1430 at 1510.856 kb on - strand, within HP15_1430 at 1510.872 kb on + strand, within HP15_1430 at 1511.029 kb on + strand at 1511.054 kb on + strand at 1511.145 kb on + strand at 1511.153 kb on - strand at 1511.257 kb on - strand at 1511.480 kb on - strand at 1511.669 kb on - strand at 1511.937 kb on + strand, within HP15_1431 at 1511.947 kb on + strand at 1511.971 kb on - strand at 1512.020 kb on + strand at 1512.046 kb on - strand at 1512.106 kb on + strand, within HP15_1432 at 1512.114 kb on - strand, within HP15_1432 at 1512.114 kb on - strand, within HP15_1432 at 1512.348 kb on - strand at 1512.513 kb on - strand, within HP15_1433 at 1512.577 kb on + strand, within HP15_1433 at 1512.577 kb on + strand, within HP15_1433 at 1512.585 kb on - strand, within HP15_1433 at 1512.585 kb on - strand, within HP15_1433 at 1512.585 kb on - strand, within HP15_1433 at 1512.662 kb on - strand, within HP15_1433 at 1512.852 kb on + strand at 1512.968 kb on - strand, within HP15_1434
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 1,510,787 + HP15_1430 0.56 -0.4 1,510,787 + HP15_1430 0.56 +1.7 1,510,816 + HP15_1430 0.61 +0.8 1,510,816 + HP15_1430 0.61 -0.4 1,510,816 + HP15_1430 0.61 +0.2 1,510,816 + HP15_1430 0.61 +1.1 1,510,824 - HP15_1430 0.62 +0.9 1,510,856 - HP15_1430 0.67 -0.1 1,510,872 + HP15_1430 0.70 -1.5 1,511,029 + -0.1 1,511,054 + +0.9 1,511,145 + -2.1 1,511,153 - +0.7 1,511,257 - -0.7 1,511,480 - -0.6 1,511,669 - -0.2 1,511,937 + HP15_1431 0.87 -1.3 1,511,947 + -0.8 1,511,971 - +0.5 1,512,020 + +1.0 1,512,046 - -0.5 1,512,106 + HP15_1432 0.24 -0.8 1,512,114 - HP15_1432 0.27 -0.4 1,512,114 - HP15_1432 0.27 -1.4 1,512,348 - +0.5 1,512,513 - HP15_1433 0.25 +1.5 1,512,577 + HP15_1433 0.38 +0.9 1,512,577 + HP15_1433 0.38 -0.0 1,512,585 - HP15_1433 0.39 +0.6 1,512,585 - HP15_1433 0.39 +1.5 1,512,585 - HP15_1433 0.39 +0.2 1,512,662 - HP15_1433 0.55 -0.3 1,512,852 + +0.1 1,512,968 - HP15_1434 0.25 -0.5
Or see this region's nucleotide sequence