Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1063 and HP15_1064 overlap by 4 nucleotides HP15_1064 and HP15_1065 are separated by 82 nucleotides HP15_1065 and HP15_1066 are separated by 136 nucleotides
HP15_1063: HP15_1063 - protein containing DUF1315, at 1,087,567 to 1,087,857
_1063
HP15_1064: HP15_1064 - conserved hypothetical protein, at 1,087,854 to 1,088,693
_1064
HP15_1065: HP15_1065 - aminopeptidase N, at 1,088,776 to 1,091,418
_1065
HP15_1066: HP15_1066 - secreted protein containing DUF1329, at 1,091,555 to 1,092,943
_1066
Position (kb)
1088
1089
1090
1091
1092 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1087.808 kb on - strand, within HP15_1063 at 1087.851 kb on + strand at 1087.935 kb on - strand at 1088.184 kb on + strand, within HP15_1064 at 1088.473 kb on - strand, within HP15_1064 at 1088.511 kb on + strand, within HP15_1064 at 1088.516 kb on + strand, within HP15_1064 at 1088.534 kb on - strand, within HP15_1064 at 1088.549 kb on - strand, within HP15_1064 at 1088.554 kb on + strand, within HP15_1064 at 1088.600 kb on - strand, within HP15_1064 at 1088.607 kb on + strand, within HP15_1064 at 1088.731 kb on - strand at 1088.798 kb on + strand at 1088.806 kb on - strand at 1088.835 kb on + strand at 1088.843 kb on + strand at 1088.843 kb on + strand at 1088.966 kb on - strand at 1088.995 kb on + strand at 1089.096 kb on + strand, within HP15_1065 at 1089.096 kb on + strand, within HP15_1065 at 1089.138 kb on + strand, within HP15_1065 at 1089.146 kb on - strand, within HP15_1065 at 1089.436 kb on + strand, within HP15_1065 at 1089.520 kb on + strand, within HP15_1065 at 1089.570 kb on + strand, within HP15_1065 at 1089.594 kb on - strand, within HP15_1065 at 1089.701 kb on + strand, within HP15_1065 at 1089.743 kb on + strand, within HP15_1065 at 1089.834 kb on + strand, within HP15_1065 at 1089.834 kb on + strand, within HP15_1065 at 1089.834 kb on + strand, within HP15_1065 at 1089.915 kb on + strand, within HP15_1065 at 1089.923 kb on - strand, within HP15_1065 at 1089.985 kb on + strand, within HP15_1065 at 1090.063 kb on + strand, within HP15_1065 at 1090.168 kb on + strand, within HP15_1065 at 1090.197 kb on - strand, within HP15_1065 at 1090.208 kb on + strand, within HP15_1065 at 1090.231 kb on + strand, within HP15_1065 at 1090.331 kb on + strand, within HP15_1065 at 1090.339 kb on - strand, within HP15_1065 at 1090.380 kb on + strand, within HP15_1065 at 1090.480 kb on - strand, within HP15_1065 at 1090.504 kb on - strand, within HP15_1065 at 1090.581 kb on + strand, within HP15_1065 at 1090.717 kb on + strand, within HP15_1065 at 1090.829 kb on + strand, within HP15_1065 at 1090.849 kb on + strand, within HP15_1065 at 1090.854 kb on + strand, within HP15_1065 at 1090.893 kb on - strand, within HP15_1065 at 1090.908 kb on + strand, within HP15_1065 at 1090.931 kb on - strand, within HP15_1065 at 1091.035 kb on - strand, within HP15_1065 at 1091.036 kb on - strand, within HP15_1065 at 1091.095 kb on + strand, within HP15_1065 at 1091.097 kb on + strand, within HP15_1065 at 1091.215 kb on - strand at 1091.243 kb on + strand at 1091.371 kb on - strand at 1091.381 kb on - strand at 1091.393 kb on - strand at 1091.395 kb on + strand at 1091.395 kb on + strand at 1091.403 kb on - strand at 1091.525 kb on - strand at 1091.547 kb on - strand at 1091.673 kb on + strand at 1091.900 kb on - strand, within HP15_1066 at 1091.922 kb on - strand, within HP15_1066 at 1092.224 kb on + strand, within HP15_1066 at 1092.227 kb on - strand, within HP15_1066 at 1092.301 kb on - strand, within HP15_1066 at 1092.309 kb on + strand, within HP15_1066 at 1092.377 kb on + strand, within HP15_1066 at 1092.378 kb on + strand, within HP15_1066
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 1,087,808 - HP15_1063 0.83 -0.8 1,087,851 + -0.4 1,087,935 - +0.0 1,088,184 + HP15_1064 0.39 +0.3 1,088,473 - HP15_1064 0.74 +0.1 1,088,511 + HP15_1064 0.78 +2.4 1,088,516 + HP15_1064 0.79 +0.1 1,088,534 - HP15_1064 0.81 -0.8 1,088,549 - HP15_1064 0.83 +0.2 1,088,554 + HP15_1064 0.83 -0.4 1,088,600 - HP15_1064 0.89 -0.2 1,088,607 + HP15_1064 0.90 +0.6 1,088,731 - -0.9 1,088,798 + -1.4 1,088,806 - -0.0 1,088,835 + -1.8 1,088,843 + -1.0 1,088,843 + -1.2 1,088,966 - -2.0 1,088,995 + -1.0 1,089,096 + HP15_1065 0.12 -0.1 1,089,096 + HP15_1065 0.12 -0.6 1,089,138 + HP15_1065 0.14 -2.0 1,089,146 - HP15_1065 0.14 -2.2 1,089,436 + HP15_1065 0.25 -1.5 1,089,520 + HP15_1065 0.28 -0.6 1,089,570 + HP15_1065 0.30 -0.8 1,089,594 - HP15_1065 0.31 -0.4 1,089,701 + HP15_1065 0.35 -2.5 1,089,743 + HP15_1065 0.37 -2.8 1,089,834 + HP15_1065 0.40 -1.4 1,089,834 + HP15_1065 0.40 -0.1 1,089,834 + HP15_1065 0.40 -0.2 1,089,915 + HP15_1065 0.43 -1.0 1,089,923 - HP15_1065 0.43 -2.0 1,089,985 + HP15_1065 0.46 -1.0 1,090,063 + HP15_1065 0.49 -0.5 1,090,168 + HP15_1065 0.53 +0.0 1,090,197 - HP15_1065 0.54 -1.2 1,090,208 + HP15_1065 0.54 -1.6 1,090,231 + HP15_1065 0.55 -1.0 1,090,331 + HP15_1065 0.59 -2.0 1,090,339 - HP15_1065 0.59 +1.6 1,090,380 + HP15_1065 0.61 -1.5 1,090,480 - HP15_1065 0.64 -0.4 1,090,504 - HP15_1065 0.65 -0.4 1,090,581 + HP15_1065 0.68 +0.6 1,090,717 + HP15_1065 0.73 -0.7 1,090,829 + HP15_1065 0.78 -0.2 1,090,849 + HP15_1065 0.78 -1.7 1,090,854 + HP15_1065 0.79 -1.1 1,090,893 - HP15_1065 0.80 -0.4 1,090,908 + HP15_1065 0.81 -0.2 1,090,931 - HP15_1065 0.82 -0.8 1,091,035 - HP15_1065 0.85 -1.2 1,091,036 - HP15_1065 0.86 -1.7 1,091,095 + HP15_1065 0.88 -1.2 1,091,097 + HP15_1065 0.88 -0.6 1,091,215 - -1.0 1,091,243 + -1.7 1,091,371 - +0.6 1,091,381 - -1.4 1,091,393 - +0.6 1,091,395 + +0.1 1,091,395 + -1.1 1,091,403 - -0.4 1,091,525 - +0.6 1,091,547 - +0.0 1,091,673 + +0.6 1,091,900 - HP15_1066 0.25 +0.8 1,091,922 - HP15_1066 0.26 -2.0 1,092,224 + HP15_1066 0.48 +1.1 1,092,227 - HP15_1066 0.48 -1.5 1,092,301 - HP15_1066 0.54 -0.6 1,092,309 + HP15_1066 0.54 +0.6 1,092,377 + HP15_1066 0.59 +0.0 1,092,378 + HP15_1066 0.59 +1.4
Or see this region's nucleotide sequence