Strain Fitness in Marinobacter adhaerens HP15 around HP15_1038

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1036 and HP15_1037 are separated by 6 nucleotidesHP15_1037 and HP15_1038 overlap by 8 nucleotidesHP15_1038 and HP15_1039 are separated by 152 nucleotides HP15_1036: HP15_1036 - transcriptional regulator, GntR family with aminotransferase domain protein, at 1,054,972 to 1,056,414 _1036 HP15_1037: HP15_1037 - two-component response regulator, at 1,056,421 to 1,057,077 _1037 HP15_1038: HP15_1038 - sensory box histidine kinase, at 1,057,070 to 1,058,584 _1038 HP15_1039: HP15_1039 - acyl-CoA synthetase, at 1,058,737 to 1,060,365 _1039 Position (kb) 1057 1058 1059Strain fitness (log2 ratio) -2 -1 0 1at 1056.141 kb on + strand, within HP15_1036at 1056.144 kb on - strand, within HP15_1036at 1056.144 kb on - strand, within HP15_1036at 1056.144 kb on - strand, within HP15_1036at 1056.144 kb on - strand, within HP15_1036at 1056.149 kb on - strand, within HP15_1036at 1056.149 kb on - strand, within HP15_1036at 1056.166 kb on + strand, within HP15_1036at 1056.169 kb on - strand, within HP15_1036at 1056.183 kb on + strand, within HP15_1036at 1056.183 kb on + strand, within HP15_1036at 1056.187 kb on + strand, within HP15_1036at 1056.191 kb on - strand, within HP15_1036at 1056.210 kb on - strand, within HP15_1036at 1056.226 kb on - strand, within HP15_1036at 1056.261 kb on + strand, within HP15_1036at 1056.327 kb on - strandat 1056.336 kb on + strandat 1056.336 kb on + strandat 1056.336 kb on + strandat 1056.336 kb on + strandat 1056.344 kb on - strandat 1056.344 kb on - strandat 1056.344 kb on - strandat 1056.344 kb on - strandat 1056.371 kb on + strandat 1056.375 kb on + strandat 1056.630 kb on + strand, within HP15_1037at 1056.630 kb on + strand, within HP15_1037at 1056.631 kb on + strand, within HP15_1037at 1056.688 kb on + strand, within HP15_1037at 1056.721 kb on + strand, within HP15_1037at 1056.767 kb on + strand, within HP15_1037at 1056.903 kb on + strand, within HP15_1037at 1056.906 kb on - strand, within HP15_1037at 1057.186 kb on + strandat 1057.244 kb on - strand, within HP15_1038at 1057.246 kb on + strand, within HP15_1038at 1057.268 kb on + strand, within HP15_1038at 1057.326 kb on + strand, within HP15_1038at 1057.334 kb on - strand, within HP15_1038at 1057.380 kb on + strand, within HP15_1038at 1057.380 kb on + strand, within HP15_1038at 1057.390 kb on - strand, within HP15_1038at 1057.397 kb on + strand, within HP15_1038at 1057.407 kb on - strand, within HP15_1038at 1057.456 kb on + strand, within HP15_1038at 1057.587 kb on + strand, within HP15_1038at 1057.881 kb on - strand, within HP15_1038at 1057.881 kb on - strand, within HP15_1038at 1058.271 kb on + strand, within HP15_1038at 1058.279 kb on - strand, within HP15_1038at 1058.282 kb on + strand, within HP15_1038at 1058.282 kb on + strand, within HP15_1038at 1058.318 kb on + strand, within HP15_1038at 1058.389 kb on + strand, within HP15_1038at 1058.433 kb on + strandat 1058.470 kb on + strandat 1058.541 kb on + strandat 1058.662 kb on - strandat 1058.662 kb on - strandat 1058.709 kb on + strandat 1058.717 kb on - strandat 1058.876 kb on + strandat 1059.019 kb on + strand, within HP15_1039at 1059.027 kb on - strand, within HP15_1039at 1059.027 kb on - strand, within HP15_1039at 1059.027 kb on - strand, within HP15_1039at 1059.042 kb on + strand, within HP15_1039at 1059.084 kb on + strand, within HP15_1039at 1059.084 kb on + strand, within HP15_1039at 1059.092 kb on - strand, within HP15_1039at 1059.092 kb on - strand, within HP15_1039at 1059.164 kb on + strand, within HP15_1039at 1059.199 kb on + strand, within HP15_1039at 1059.205 kb on - strand, within HP15_1039at 1059.379 kb on + strand, within HP15_1039at 1059.414 kb on + strand, within HP15_1039at 1059.422 kb on - strand, within HP15_1039at 1059.470 kb on + strand, within HP15_1039at 1059.470 kb on - strand, within HP15_1039at 1059.550 kb on + strand, within HP15_1039at 1059.555 kb on + strand, within HP15_1039at 1059.558 kb on - strand, within HP15_1039at 1059.563 kb on - strand, within HP15_1039

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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1,056,141 + HP15_1036 0.81 +0.8
1,056,144 - HP15_1036 0.81 +0.4
1,056,144 - HP15_1036 0.81 +0.1
1,056,144 - HP15_1036 0.81 +0.6
1,056,144 - HP15_1036 0.81 -0.4
1,056,149 - HP15_1036 0.82 -0.6
1,056,149 - HP15_1036 0.82 +0.2
1,056,166 + HP15_1036 0.83 -0.4
1,056,169 - HP15_1036 0.83 +0.2
1,056,183 + HP15_1036 0.84 +1.2
1,056,183 + HP15_1036 0.84 +0.2
1,056,187 + HP15_1036 0.84 +0.6
1,056,191 - HP15_1036 0.84 +0.3
1,056,210 - HP15_1036 0.86 +0.6
1,056,226 - HP15_1036 0.87 +0.0
1,056,261 + HP15_1036 0.89 -0.0
1,056,327 - +0.3
1,056,336 + +0.6
1,056,336 + -0.5
1,056,336 + +0.6
1,056,336 + +0.5
1,056,344 - +0.4
1,056,344 - -0.7
1,056,344 - -0.1
1,056,344 - -0.5
1,056,371 + -0.5
1,056,375 + +1.0
1,056,630 + HP15_1037 0.32 +0.0
1,056,630 + HP15_1037 0.32 -0.7
1,056,631 + HP15_1037 0.32 -0.7
1,056,688 + HP15_1037 0.41 -0.7
1,056,721 + HP15_1037 0.46 -0.9
1,056,767 + HP15_1037 0.53 -0.4
1,056,903 + HP15_1037 0.73 -2.2
1,056,906 - HP15_1037 0.74 -0.5
1,057,186 + -2.1
1,057,244 - HP15_1038 0.11 -0.4
1,057,246 + HP15_1038 0.12 -0.3
1,057,268 + HP15_1038 0.13 -0.6
1,057,326 + HP15_1038 0.17 +0.2
1,057,334 - HP15_1038 0.17 -0.1
1,057,380 + HP15_1038 0.20 -0.4
1,057,380 + HP15_1038 0.20 -1.1
1,057,390 - HP15_1038 0.21 -0.2
1,057,397 + HP15_1038 0.22 -0.5
1,057,407 - HP15_1038 0.22 +0.4
1,057,456 + HP15_1038 0.25 -1.7
1,057,587 + HP15_1038 0.34 -0.4
1,057,881 - HP15_1038 0.54 -0.6
1,057,881 - HP15_1038 0.54 -1.4
1,058,271 + HP15_1038 0.79 +0.3
1,058,279 - HP15_1038 0.80 +0.6
1,058,282 + HP15_1038 0.80 -0.7
1,058,282 + HP15_1038 0.80 -1.2
1,058,318 + HP15_1038 0.82 -1.0
1,058,389 + HP15_1038 0.87 -1.0
1,058,433 + +0.6
1,058,470 + -0.6
1,058,541 + +0.0
1,058,662 - +0.2
1,058,662 - +0.0
1,058,709 + -1.2
1,058,717 - -0.6
1,058,876 + +0.7
1,059,019 + HP15_1039 0.17 +1.0
1,059,027 - HP15_1039 0.18 +0.2
1,059,027 - HP15_1039 0.18 +1.3
1,059,027 - HP15_1039 0.18 -0.4
1,059,042 + HP15_1039 0.19 +0.0
1,059,084 + HP15_1039 0.21 +0.2
1,059,084 + HP15_1039 0.21 +0.1
1,059,092 - HP15_1039 0.22 +0.5
1,059,092 - HP15_1039 0.22 +0.1
1,059,164 + HP15_1039 0.26 +0.0
1,059,199 + HP15_1039 0.28 -0.4
1,059,205 - HP15_1039 0.29 +0.0
1,059,379 + HP15_1039 0.39 -1.5
1,059,414 + HP15_1039 0.42 -0.1
1,059,422 - HP15_1039 0.42 +0.2
1,059,470 + HP15_1039 0.45 +0.8
1,059,470 - HP15_1039 0.45 -0.5
1,059,550 + HP15_1039 0.50 +0.1
1,059,555 + HP15_1039 0.50 +0.1
1,059,558 - HP15_1039 0.50 -0.5
1,059,563 - HP15_1039 0.51 -0.4

Or see this region's nucleotide sequence