Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1036 and HP15_1037 are separated by 6 nucleotides HP15_1037 and HP15_1038 overlap by 8 nucleotides HP15_1038 and HP15_1039 are separated by 152 nucleotides
HP15_1036: HP15_1036 - transcriptional regulator, GntR family with aminotransferase domain protein, at 1,054,972 to 1,056,414
_1036
HP15_1037: HP15_1037 - two-component response regulator, at 1,056,421 to 1,057,077
_1037
HP15_1038: HP15_1038 - sensory box histidine kinase, at 1,057,070 to 1,058,584
_1038
HP15_1039: HP15_1039 - acyl-CoA synthetase, at 1,058,737 to 1,060,365
_1039
Position (kb)
1057
1058
1059 Strain fitness (log2 ratio)
-2
-1
0
1 at 1056.141 kb on + strand, within HP15_1036 at 1056.144 kb on - strand, within HP15_1036 at 1056.144 kb on - strand, within HP15_1036 at 1056.144 kb on - strand, within HP15_1036 at 1056.144 kb on - strand, within HP15_1036 at 1056.149 kb on - strand, within HP15_1036 at 1056.149 kb on - strand, within HP15_1036 at 1056.166 kb on + strand, within HP15_1036 at 1056.169 kb on - strand, within HP15_1036 at 1056.183 kb on + strand, within HP15_1036 at 1056.183 kb on + strand, within HP15_1036 at 1056.187 kb on + strand, within HP15_1036 at 1056.191 kb on - strand, within HP15_1036 at 1056.210 kb on - strand, within HP15_1036 at 1056.226 kb on - strand, within HP15_1036 at 1056.261 kb on + strand, within HP15_1036 at 1056.327 kb on - strand at 1056.336 kb on + strand at 1056.336 kb on + strand at 1056.336 kb on + strand at 1056.336 kb on + strand at 1056.344 kb on - strand at 1056.344 kb on - strand at 1056.344 kb on - strand at 1056.344 kb on - strand at 1056.371 kb on + strand at 1056.375 kb on + strand at 1056.630 kb on + strand, within HP15_1037 at 1056.630 kb on + strand, within HP15_1037 at 1056.631 kb on + strand, within HP15_1037 at 1056.688 kb on + strand, within HP15_1037 at 1056.721 kb on + strand, within HP15_1037 at 1056.767 kb on + strand, within HP15_1037 at 1056.903 kb on + strand, within HP15_1037 at 1056.906 kb on - strand, within HP15_1037 at 1057.186 kb on + strand at 1057.244 kb on - strand, within HP15_1038 at 1057.246 kb on + strand, within HP15_1038 at 1057.268 kb on + strand, within HP15_1038 at 1057.326 kb on + strand, within HP15_1038 at 1057.334 kb on - strand, within HP15_1038 at 1057.380 kb on + strand, within HP15_1038 at 1057.380 kb on + strand, within HP15_1038 at 1057.390 kb on - strand, within HP15_1038 at 1057.397 kb on + strand, within HP15_1038 at 1057.407 kb on - strand, within HP15_1038 at 1057.456 kb on + strand, within HP15_1038 at 1057.587 kb on + strand, within HP15_1038 at 1057.881 kb on - strand, within HP15_1038 at 1057.881 kb on - strand, within HP15_1038 at 1058.271 kb on + strand, within HP15_1038 at 1058.279 kb on - strand, within HP15_1038 at 1058.282 kb on + strand, within HP15_1038 at 1058.282 kb on + strand, within HP15_1038 at 1058.318 kb on + strand, within HP15_1038 at 1058.389 kb on + strand, within HP15_1038 at 1058.433 kb on + strand at 1058.470 kb on + strand at 1058.541 kb on + strand at 1058.662 kb on - strand at 1058.662 kb on - strand at 1058.709 kb on + strand at 1058.717 kb on - strand at 1058.876 kb on + strand at 1059.019 kb on + strand, within HP15_1039 at 1059.027 kb on - strand, within HP15_1039 at 1059.027 kb on - strand, within HP15_1039 at 1059.027 kb on - strand, within HP15_1039 at 1059.042 kb on + strand, within HP15_1039 at 1059.084 kb on + strand, within HP15_1039 at 1059.084 kb on + strand, within HP15_1039 at 1059.092 kb on - strand, within HP15_1039 at 1059.092 kb on - strand, within HP15_1039 at 1059.164 kb on + strand, within HP15_1039 at 1059.199 kb on + strand, within HP15_1039 at 1059.205 kb on - strand, within HP15_1039 at 1059.379 kb on + strand, within HP15_1039 at 1059.414 kb on + strand, within HP15_1039 at 1059.422 kb on - strand, within HP15_1039 at 1059.470 kb on + strand, within HP15_1039 at 1059.470 kb on - strand, within HP15_1039 at 1059.550 kb on + strand, within HP15_1039 at 1059.555 kb on + strand, within HP15_1039 at 1059.558 kb on - strand, within HP15_1039 at 1059.563 kb on - strand, within HP15_1039
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 1,056,141 + HP15_1036 0.81 +0.8 1,056,144 - HP15_1036 0.81 +0.4 1,056,144 - HP15_1036 0.81 +0.1 1,056,144 - HP15_1036 0.81 +0.6 1,056,144 - HP15_1036 0.81 -0.4 1,056,149 - HP15_1036 0.82 -0.6 1,056,149 - HP15_1036 0.82 +0.2 1,056,166 + HP15_1036 0.83 -0.4 1,056,169 - HP15_1036 0.83 +0.2 1,056,183 + HP15_1036 0.84 +1.2 1,056,183 + HP15_1036 0.84 +0.2 1,056,187 + HP15_1036 0.84 +0.6 1,056,191 - HP15_1036 0.84 +0.3 1,056,210 - HP15_1036 0.86 +0.6 1,056,226 - HP15_1036 0.87 +0.0 1,056,261 + HP15_1036 0.89 -0.0 1,056,327 - +0.3 1,056,336 + +0.6 1,056,336 + -0.5 1,056,336 + +0.6 1,056,336 + +0.5 1,056,344 - +0.4 1,056,344 - -0.7 1,056,344 - -0.1 1,056,344 - -0.5 1,056,371 + -0.5 1,056,375 + +1.0 1,056,630 + HP15_1037 0.32 +0.0 1,056,630 + HP15_1037 0.32 -0.7 1,056,631 + HP15_1037 0.32 -0.7 1,056,688 + HP15_1037 0.41 -0.7 1,056,721 + HP15_1037 0.46 -0.9 1,056,767 + HP15_1037 0.53 -0.4 1,056,903 + HP15_1037 0.73 -2.2 1,056,906 - HP15_1037 0.74 -0.5 1,057,186 + -2.1 1,057,244 - HP15_1038 0.11 -0.4 1,057,246 + HP15_1038 0.12 -0.3 1,057,268 + HP15_1038 0.13 -0.6 1,057,326 + HP15_1038 0.17 +0.2 1,057,334 - HP15_1038 0.17 -0.1 1,057,380 + HP15_1038 0.20 -0.4 1,057,380 + HP15_1038 0.20 -1.1 1,057,390 - HP15_1038 0.21 -0.2 1,057,397 + HP15_1038 0.22 -0.5 1,057,407 - HP15_1038 0.22 +0.4 1,057,456 + HP15_1038 0.25 -1.7 1,057,587 + HP15_1038 0.34 -0.4 1,057,881 - HP15_1038 0.54 -0.6 1,057,881 - HP15_1038 0.54 -1.4 1,058,271 + HP15_1038 0.79 +0.3 1,058,279 - HP15_1038 0.80 +0.6 1,058,282 + HP15_1038 0.80 -0.7 1,058,282 + HP15_1038 0.80 -1.2 1,058,318 + HP15_1038 0.82 -1.0 1,058,389 + HP15_1038 0.87 -1.0 1,058,433 + +0.6 1,058,470 + -0.6 1,058,541 + +0.0 1,058,662 - +0.2 1,058,662 - +0.0 1,058,709 + -1.2 1,058,717 - -0.6 1,058,876 + +0.7 1,059,019 + HP15_1039 0.17 +1.0 1,059,027 - HP15_1039 0.18 +0.2 1,059,027 - HP15_1039 0.18 +1.3 1,059,027 - HP15_1039 0.18 -0.4 1,059,042 + HP15_1039 0.19 +0.0 1,059,084 + HP15_1039 0.21 +0.2 1,059,084 + HP15_1039 0.21 +0.1 1,059,092 - HP15_1039 0.22 +0.5 1,059,092 - HP15_1039 0.22 +0.1 1,059,164 + HP15_1039 0.26 +0.0 1,059,199 + HP15_1039 0.28 -0.4 1,059,205 - HP15_1039 0.29 +0.0 1,059,379 + HP15_1039 0.39 -1.5 1,059,414 + HP15_1039 0.42 -0.1 1,059,422 - HP15_1039 0.42 +0.2 1,059,470 + HP15_1039 0.45 +0.8 1,059,470 - HP15_1039 0.45 -0.5 1,059,550 + HP15_1039 0.50 +0.1 1,059,555 + HP15_1039 0.50 +0.1 1,059,558 - HP15_1039 0.50 -0.5 1,059,563 - HP15_1039 0.51 -0.4
Or see this region's nucleotide sequence