Strain Fitness in Marinobacter adhaerens HP15 around HP15_1009

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1008 and HP15_1009 are separated by 4 nucleotidesHP15_1009 and HP15_1010 are separated by 419 nucleotides HP15_1008: HP15_1008 - acyl-CoA dehydrogenase domain protein, at 1,018,588 to 1,019,739 _1008 HP15_1009: HP15_1009 - acyl-CoA thiolase, at 1,019,744 to 1,020,937 _1009 HP15_1010: HP15_1010 - sodium-dependent transporter, NSS family protein, at 1,021,357 to 1,022,694 _1010 Position (kb) 1019 1020 1021Strain fitness (log2 ratio) -2 -1 0 1 2at 1018.753 kb on - strand, within HP15_1008at 1018.816 kb on - strand, within HP15_1008at 1018.877 kb on - strand, within HP15_1008at 1019.002 kb on + strand, within HP15_1008at 1019.229 kb on + strand, within HP15_1008at 1019.363 kb on + strand, within HP15_1008at 1019.391 kb on + strand, within HP15_1008at 1019.433 kb on - strand, within HP15_1008at 1019.473 kb on - strand, within HP15_1008at 1019.506 kb on + strand, within HP15_1008at 1019.506 kb on - strand, within HP15_1008at 1019.548 kb on + strand, within HP15_1008at 1019.556 kb on - strand, within HP15_1008at 1019.556 kb on - strand, within HP15_1008at 1019.616 kb on + strand, within HP15_1008at 1019.730 kb on - strandat 1019.730 kb on - strandat 1019.730 kb on - strandat 1019.796 kb on + strandat 1019.796 kb on + strandat 1019.826 kb on + strandat 1019.827 kb on - strandat 1019.829 kb on - strandat 1019.838 kb on + strandat 1019.846 kb on - strandat 1019.893 kb on + strand, within HP15_1009at 1020.014 kb on + strand, within HP15_1009at 1020.064 kb on + strand, within HP15_1009at 1020.064 kb on + strand, within HP15_1009at 1020.064 kb on + strand, within HP15_1009at 1020.064 kb on + strand, within HP15_1009at 1020.064 kb on + strand, within HP15_1009at 1020.064 kb on + strand, within HP15_1009at 1020.184 kb on - strand, within HP15_1009at 1020.245 kb on - strand, within HP15_1009at 1020.255 kb on - strand, within HP15_1009at 1020.421 kb on - strand, within HP15_1009at 1020.530 kb on - strand, within HP15_1009at 1020.577 kb on - strand, within HP15_1009at 1020.613 kb on - strand, within HP15_1009at 1020.624 kb on + strand, within HP15_1009at 1020.632 kb on - strand, within HP15_1009at 1020.791 kb on + strand, within HP15_1009at 1020.849 kb on + strandat 1020.871 kb on - strandat 1020.889 kb on + strandat 1020.915 kb on - strandat 1020.969 kb on - strandat 1021.129 kb on + strandat 1021.312 kb on + strandat 1021.597 kb on + strand, within HP15_1010at 1021.631 kb on - strand, within HP15_1010at 1021.684 kb on - strand, within HP15_1010at 1021.922 kb on + strand, within HP15_1010

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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1,018,753 - HP15_1008 0.14 -0.0
1,018,816 - HP15_1008 0.20 +1.6
1,018,877 - HP15_1008 0.25 +0.5
1,019,002 + HP15_1008 0.36 -0.1
1,019,229 + HP15_1008 0.56 +0.6
1,019,363 + HP15_1008 0.67 +1.2
1,019,391 + HP15_1008 0.70 -0.1
1,019,433 - HP15_1008 0.73 +0.6
1,019,473 - HP15_1008 0.77 -1.0
1,019,506 + HP15_1008 0.80 -0.2
1,019,506 - HP15_1008 0.80 -0.7
1,019,548 + HP15_1008 0.83 -0.7
1,019,556 - HP15_1008 0.84 -1.2
1,019,556 - HP15_1008 0.84 -0.4
1,019,616 + HP15_1008 0.89 +0.6
1,019,730 - -0.6
1,019,730 - -0.6
1,019,730 - +0.1
1,019,796 + -0.7
1,019,796 + -1.1
1,019,826 + +0.2
1,019,827 - +0.6
1,019,829 - +0.1
1,019,838 + -0.4
1,019,846 - +2.6
1,019,893 + HP15_1009 0.12 -0.3
1,020,014 + HP15_1009 0.23 +2.2
1,020,064 + HP15_1009 0.27 -0.1
1,020,064 + HP15_1009 0.27 -0.4
1,020,064 + HP15_1009 0.27 -0.0
1,020,064 + HP15_1009 0.27 +1.1
1,020,064 + HP15_1009 0.27 -0.4
1,020,064 + HP15_1009 0.27 +0.5
1,020,184 - HP15_1009 0.37 -1.4
1,020,245 - HP15_1009 0.42 +0.2
1,020,255 - HP15_1009 0.43 -0.9
1,020,421 - HP15_1009 0.57 -0.1
1,020,530 - HP15_1009 0.66 +0.6
1,020,577 - HP15_1009 0.70 -1.4
1,020,613 - HP15_1009 0.73 +0.6
1,020,624 + HP15_1009 0.74 -1.4
1,020,632 - HP15_1009 0.74 +0.4
1,020,791 + HP15_1009 0.88 -0.2
1,020,849 + -1.4
1,020,871 - -0.0
1,020,889 + +0.6
1,020,915 - +0.3
1,020,969 - -1.9
1,021,129 + +0.1
1,021,312 + +1.0
1,021,597 + HP15_1010 0.18 +0.1
1,021,631 - HP15_1010 0.20 +0.6
1,021,684 - HP15_1010 0.24 +2.4
1,021,922 + HP15_1010 0.42 -1.1

Or see this region's nucleotide sequence