Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1008 and HP15_1009 are separated by 4 nucleotides HP15_1009 and HP15_1010 are separated by 419 nucleotides
HP15_1008: HP15_1008 - acyl-CoA dehydrogenase domain protein, at 1,018,588 to 1,019,739
_1008
HP15_1009: HP15_1009 - acyl-CoA thiolase, at 1,019,744 to 1,020,937
_1009
HP15_1010: HP15_1010 - sodium-dependent transporter, NSS family protein, at 1,021,357 to 1,022,694
_1010
Position (kb)
1019
1020
1021 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1018.753 kb on - strand, within HP15_1008 at 1018.816 kb on - strand, within HP15_1008 at 1018.877 kb on - strand, within HP15_1008 at 1019.002 kb on + strand, within HP15_1008 at 1019.229 kb on + strand, within HP15_1008 at 1019.363 kb on + strand, within HP15_1008 at 1019.391 kb on + strand, within HP15_1008 at 1019.433 kb on - strand, within HP15_1008 at 1019.473 kb on - strand, within HP15_1008 at 1019.506 kb on + strand, within HP15_1008 at 1019.506 kb on - strand, within HP15_1008 at 1019.548 kb on + strand, within HP15_1008 at 1019.556 kb on - strand, within HP15_1008 at 1019.556 kb on - strand, within HP15_1008 at 1019.616 kb on + strand, within HP15_1008 at 1019.730 kb on - strand at 1019.730 kb on - strand at 1019.730 kb on - strand at 1019.796 kb on + strand at 1019.796 kb on + strand at 1019.826 kb on + strand at 1019.827 kb on - strand at 1019.829 kb on - strand at 1019.838 kb on + strand at 1019.846 kb on - strand at 1019.893 kb on + strand, within HP15_1009 at 1020.014 kb on + strand, within HP15_1009 at 1020.064 kb on + strand, within HP15_1009 at 1020.064 kb on + strand, within HP15_1009 at 1020.064 kb on + strand, within HP15_1009 at 1020.064 kb on + strand, within HP15_1009 at 1020.064 kb on + strand, within HP15_1009 at 1020.064 kb on + strand, within HP15_1009 at 1020.184 kb on - strand, within HP15_1009 at 1020.245 kb on - strand, within HP15_1009 at 1020.255 kb on - strand, within HP15_1009 at 1020.421 kb on - strand, within HP15_1009 at 1020.530 kb on - strand, within HP15_1009 at 1020.577 kb on - strand, within HP15_1009 at 1020.613 kb on - strand, within HP15_1009 at 1020.624 kb on + strand, within HP15_1009 at 1020.632 kb on - strand, within HP15_1009 at 1020.791 kb on + strand, within HP15_1009 at 1020.849 kb on + strand at 1020.871 kb on - strand at 1020.889 kb on + strand at 1020.915 kb on - strand at 1020.969 kb on - strand at 1021.129 kb on + strand at 1021.312 kb on + strand at 1021.597 kb on + strand, within HP15_1010 at 1021.631 kb on - strand, within HP15_1010 at 1021.684 kb on - strand, within HP15_1010 at 1021.922 kb on + strand, within HP15_1010
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 1,018,753 - HP15_1008 0.14 -0.0 1,018,816 - HP15_1008 0.20 +1.6 1,018,877 - HP15_1008 0.25 +0.5 1,019,002 + HP15_1008 0.36 -0.1 1,019,229 + HP15_1008 0.56 +0.6 1,019,363 + HP15_1008 0.67 +1.2 1,019,391 + HP15_1008 0.70 -0.1 1,019,433 - HP15_1008 0.73 +0.6 1,019,473 - HP15_1008 0.77 -1.0 1,019,506 + HP15_1008 0.80 -0.2 1,019,506 - HP15_1008 0.80 -0.7 1,019,548 + HP15_1008 0.83 -0.7 1,019,556 - HP15_1008 0.84 -1.2 1,019,556 - HP15_1008 0.84 -0.4 1,019,616 + HP15_1008 0.89 +0.6 1,019,730 - -0.6 1,019,730 - -0.6 1,019,730 - +0.1 1,019,796 + -0.7 1,019,796 + -1.1 1,019,826 + +0.2 1,019,827 - +0.6 1,019,829 - +0.1 1,019,838 + -0.4 1,019,846 - +2.6 1,019,893 + HP15_1009 0.12 -0.3 1,020,014 + HP15_1009 0.23 +2.2 1,020,064 + HP15_1009 0.27 -0.1 1,020,064 + HP15_1009 0.27 -0.4 1,020,064 + HP15_1009 0.27 -0.0 1,020,064 + HP15_1009 0.27 +1.1 1,020,064 + HP15_1009 0.27 -0.4 1,020,064 + HP15_1009 0.27 +0.5 1,020,184 - HP15_1009 0.37 -1.4 1,020,245 - HP15_1009 0.42 +0.2 1,020,255 - HP15_1009 0.43 -0.9 1,020,421 - HP15_1009 0.57 -0.1 1,020,530 - HP15_1009 0.66 +0.6 1,020,577 - HP15_1009 0.70 -1.4 1,020,613 - HP15_1009 0.73 +0.6 1,020,624 + HP15_1009 0.74 -1.4 1,020,632 - HP15_1009 0.74 +0.4 1,020,791 + HP15_1009 0.88 -0.2 1,020,849 + -1.4 1,020,871 - -0.0 1,020,889 + +0.6 1,020,915 - +0.3 1,020,969 - -1.9 1,021,129 + +0.1 1,021,312 + +1.0 1,021,597 + HP15_1010 0.18 +0.1 1,021,631 - HP15_1010 0.20 +0.6 1,021,684 - HP15_1010 0.24 +2.4 1,021,922 + HP15_1010 0.42 -1.1
Or see this region's nucleotide sequence