Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23230

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23225 and BWI76_RS23230 overlap by 4 nucleotidesBWI76_RS23230 and BWI76_RS23235 overlap by 4 nucleotides BWI76_RS23225: BWI76_RS23225 - exonuclease V subunit alpha, at 4,838,453 to 4,840,288 _RS23225 BWI76_RS23230: BWI76_RS23230 - exodeoxyribonuclease V subunit beta, at 4,840,285 to 4,843,830 _RS23230 BWI76_RS23235: BWI76_RS23235 - pitrilysin, at 4,843,827 to 4,846,712 _RS23235 Position (kb) 4840 4841 4842 4843 4844Strain fitness (log2 ratio) -3 -2 -1 0 1at 4839.411 kb on + strand, within BWI76_RS23225at 4839.713 kb on - strand, within BWI76_RS23225at 4839.788 kb on + strand, within BWI76_RS23225at 4839.951 kb on + strand, within BWI76_RS23225at 4839.951 kb on + strand, within BWI76_RS23225at 4840.660 kb on - strand, within BWI76_RS23230at 4841.007 kb on - strand, within BWI76_RS23230at 4841.684 kb on + strand, within BWI76_RS23230at 4842.084 kb on - strand, within BWI76_RS23230at 4842.218 kb on + strand, within BWI76_RS23230at 4842.568 kb on + strand, within BWI76_RS23230at 4843.097 kb on + strand, within BWI76_RS23230at 4843.121 kb on + strand, within BWI76_RS23230at 4843.210 kb on - strand, within BWI76_RS23230at 4843.318 kb on - strand, within BWI76_RS23230at 4843.502 kb on + strandat 4843.592 kb on - strandat 4844.147 kb on + strand, within BWI76_RS23235at 4844.528 kb on - strand, within BWI76_RS23235at 4844.657 kb on + strand, within BWI76_RS23235

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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4,839,411 + BWI76_RS23225 0.52 +0.1
4,839,713 - BWI76_RS23225 0.69 +0.9
4,839,788 + BWI76_RS23225 0.73 +0.0
4,839,951 + BWI76_RS23225 0.82 -0.2
4,839,951 + BWI76_RS23225 0.82 +0.2
4,840,660 - BWI76_RS23230 0.11 -2.4
4,841,007 - BWI76_RS23230 0.20 -1.9
4,841,684 + BWI76_RS23230 0.39 -1.4
4,842,084 - BWI76_RS23230 0.51 -2.7
4,842,218 + BWI76_RS23230 0.55 -2.8
4,842,568 + BWI76_RS23230 0.64 -2.2
4,843,097 + BWI76_RS23230 0.79 -1.7
4,843,121 + BWI76_RS23230 0.80 -1.9
4,843,210 - BWI76_RS23230 0.82 -2.8
4,843,318 - BWI76_RS23230 0.86 -3.1
4,843,502 + -2.1
4,843,592 - -2.9
4,844,147 + BWI76_RS23235 0.11 -1.7
4,844,528 - BWI76_RS23235 0.24 +0.1
4,844,657 + BWI76_RS23235 0.29 -0.3

Or see this region's nucleotide sequence