Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21480

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21475 and BWI76_RS21480 are separated by 9 nucleotidesBWI76_RS21480 and BWI76_RS21485 are separated by 344 nucleotidesBWI76_RS21485 and BWI76_RS21490 overlap by 8 nucleotides BWI76_RS21475: BWI76_RS21475 - bifunctional chorismate mutase/prephenate dehydrogenase, at 4,498,689 to 4,499,810 _RS21475 BWI76_RS21480: BWI76_RS21480 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 4,499,820 to 4,500,890 _RS21480 BWI76_RS21485: BWI76_RS21485 - DUF4154 domain-containing protein, at 4,501,235 to 4,501,744 _RS21485 BWI76_RS21490: BWI76_RS21490 - GGDEF domain-containing protein, at 4,501,737 to 4,502,960 _RS21490 Position (kb) 4499 4500 4501Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 4498.908 kb on - strand, within BWI76_RS21475at 4499.099 kb on - strand, within BWI76_RS21475at 4499.118 kb on - strand, within BWI76_RS21475at 4499.220 kb on + strand, within BWI76_RS21475at 4499.591 kb on - strand, within BWI76_RS21475at 4499.687 kb on + strand, within BWI76_RS21475at 4499.758 kb on + strandat 4499.958 kb on + strand, within BWI76_RS21480at 4499.968 kb on - strand, within BWI76_RS21480at 4500.016 kb on + strand, within BWI76_RS21480at 4500.016 kb on + strand, within BWI76_RS21480at 4500.024 kb on - strand, within BWI76_RS21480at 4500.221 kb on - strand, within BWI76_RS21480at 4500.384 kb on - strand, within BWI76_RS21480at 4500.440 kb on - strand, within BWI76_RS21480at 4500.481 kb on + strand, within BWI76_RS21480at 4500.584 kb on + strand, within BWI76_RS21480at 4500.623 kb on + strand, within BWI76_RS21480at 4500.631 kb on - strand, within BWI76_RS21480at 4500.634 kb on + strand, within BWI76_RS21480at 4500.641 kb on + strand, within BWI76_RS21480at 4500.827 kb on + strandat 4501.193 kb on - strandat 4501.220 kb on + strandat 4501.241 kb on + strandat 4501.247 kb on - strandat 4501.287 kb on + strand, within BWI76_RS21485at 4501.287 kb on + strand, within BWI76_RS21485at 4501.299 kb on + strand, within BWI76_RS21485at 4501.307 kb on - strand, within BWI76_RS21485at 4501.347 kb on - strand, within BWI76_RS21485at 4501.377 kb on + strand, within BWI76_RS21485at 4501.385 kb on - strand, within BWI76_RS21485at 4501.385 kb on - strand, within BWI76_RS21485at 4501.385 kb on - strand, within BWI76_RS21485at 4501.385 kb on - strand, within BWI76_RS21485at 4501.385 kb on - strand, within BWI76_RS21485at 4501.385 kb on - strand, within BWI76_RS21485at 4501.385 kb on - strand, within BWI76_RS21485at 4501.414 kb on - strand, within BWI76_RS21485at 4501.420 kb on - strand, within BWI76_RS21485at 4501.421 kb on - strand, within BWI76_RS21485at 4501.421 kb on - strand, within BWI76_RS21485at 4501.492 kb on - strand, within BWI76_RS21485at 4501.613 kb on - strand, within BWI76_RS21485at 4501.613 kb on - strand, within BWI76_RS21485at 4501.628 kb on - strand, within BWI76_RS21485at 4501.684 kb on - strand, within BWI76_RS21485at 4501.697 kb on - strandat 4501.701 kb on + strandat 4501.709 kb on + strandat 4501.709 kb on - strandat 4501.709 kb on - strandat 4501.711 kb on + strandat 4501.758 kb on + strandat 4501.829 kb on + strandat 4501.834 kb on + strandat 4501.834 kb on + strandat 4501.836 kb on + strandat 4501.836 kb on + strandat 4501.836 kb on + strandat 4501.844 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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4,498,908 - BWI76_RS21475 0.20 -5.9
4,499,099 - BWI76_RS21475 0.37 -3.3
4,499,118 - BWI76_RS21475 0.38 -5.1
4,499,220 + BWI76_RS21475 0.47 -4.4
4,499,591 - BWI76_RS21475 0.80 -4.3
4,499,687 + BWI76_RS21475 0.89 -3.5
4,499,758 + -1.8
4,499,958 + BWI76_RS21480 0.13 -4.3
4,499,968 - BWI76_RS21480 0.14 -0.3
4,500,016 + BWI76_RS21480 0.18 -2.4
4,500,016 + BWI76_RS21480 0.18 -2.5
4,500,024 - BWI76_RS21480 0.19 -1.8
4,500,221 - BWI76_RS21480 0.37 -1.1
4,500,384 - BWI76_RS21480 0.53 -1.5
4,500,440 - BWI76_RS21480 0.58 -0.8
4,500,481 + BWI76_RS21480 0.62 -3.3
4,500,584 + BWI76_RS21480 0.71 -1.7
4,500,623 + BWI76_RS21480 0.75 -2.2
4,500,631 - BWI76_RS21480 0.76 -1.9
4,500,634 + BWI76_RS21480 0.76 -3.2
4,500,641 + BWI76_RS21480 0.77 -3.2
4,500,827 + -3.9
4,501,193 - -0.8
4,501,220 + -0.3
4,501,241 + +0.2
4,501,247 - +0.2
4,501,287 + BWI76_RS21485 0.10 -0.5
4,501,287 + BWI76_RS21485 0.10 -0.1
4,501,299 + BWI76_RS21485 0.13 +0.6
4,501,307 - BWI76_RS21485 0.14 -0.1
4,501,347 - BWI76_RS21485 0.22 +0.8
4,501,377 + BWI76_RS21485 0.28 +0.4
4,501,385 - BWI76_RS21485 0.29 +0.3
4,501,385 - BWI76_RS21485 0.29 +0.8
4,501,385 - BWI76_RS21485 0.29 -0.1
4,501,385 - BWI76_RS21485 0.29 +0.8
4,501,385 - BWI76_RS21485 0.29 +0.7
4,501,385 - BWI76_RS21485 0.29 +0.7
4,501,385 - BWI76_RS21485 0.29 +0.5
4,501,414 - BWI76_RS21485 0.35 -0.1
4,501,420 - BWI76_RS21485 0.36 +1.1
4,501,421 - BWI76_RS21485 0.36 +0.2
4,501,421 - BWI76_RS21485 0.36 +1.1
4,501,492 - BWI76_RS21485 0.50 +1.8
4,501,613 - BWI76_RS21485 0.74 -1.1
4,501,613 - BWI76_RS21485 0.74 +0.7
4,501,628 - BWI76_RS21485 0.77 +1.9
4,501,684 - BWI76_RS21485 0.88 +0.1
4,501,697 - +0.7
4,501,701 + -0.9
4,501,709 + +0.3
4,501,709 - +0.4
4,501,709 - +0.7
4,501,711 + -0.0
4,501,758 + +0.6
4,501,829 + +0.1
4,501,834 + -0.1
4,501,834 + +0.8
4,501,836 + +0.1
4,501,836 + -0.3
4,501,836 + -0.5
4,501,844 - -0.9

Or see this region's nucleotide sequence