Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20690

Experiment: L-Glutamic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS20685 and BWI76_RS20690 are separated by 118 nucleotidesBWI76_RS20690 and BWI76_RS20695 overlap by 11 nucleotidesBWI76_RS20695 and BWI76_RS20700 overlap by 1 nucleotides BWI76_RS20685: BWI76_RS20685 - cysteine synthase B, at 4,326,837 to 4,327,748 _RS20685 BWI76_RS20690: BWI76_RS20690 - sulfate ABC transporter ATP-binding protein, at 4,327,867 to 4,328,961 _RS20690 BWI76_RS20695: BWI76_RS20695 - sulfate/thiosulfate transporter permease subunit, at 4,328,951 to 4,329,826 _RS20695 BWI76_RS20700: BWI76_RS20700 - sulfate/thiosulfate transporter subunit, at 4,329,826 to 4,330,659 _RS20700 Position (kb) 4327 4328 4329Strain fitness (log2 ratio) -2 -1 0 1at 4327.165 kb on - strand, within BWI76_RS20685at 4327.801 kb on - strandat 4327.822 kb on - strandat 4327.979 kb on + strand, within BWI76_RS20690at 4328.069 kb on + strand, within BWI76_RS20690at 4328.214 kb on - strand, within BWI76_RS20690at 4328.633 kb on + strand, within BWI76_RS20690at 4328.766 kb on + strand, within BWI76_RS20690at 4328.766 kb on + strand, within BWI76_RS20690at 4328.785 kb on + strand, within BWI76_RS20690at 4328.885 kb on - strandat 4328.914 kb on - strandat 4329.541 kb on - strand, within BWI76_RS20695at 4329.542 kb on + strand, within BWI76_RS20695at 4329.550 kb on - strand, within BWI76_RS20695at 4329.748 kb on + strandat 4329.874 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
remove
4,327,165 - BWI76_RS20685 0.36 -0.6
4,327,801 - -0.7
4,327,822 - -0.8
4,327,979 + BWI76_RS20690 0.10 -1.0
4,328,069 + BWI76_RS20690 0.18 -1.4
4,328,214 - BWI76_RS20690 0.32 -0.9
4,328,633 + BWI76_RS20690 0.70 -0.5
4,328,766 + BWI76_RS20690 0.82 -1.7
4,328,766 + BWI76_RS20690 0.82 -0.5
4,328,785 + BWI76_RS20690 0.84 -0.9
4,328,885 - +0.1
4,328,914 - -0.8
4,329,541 - BWI76_RS20695 0.67 -1.0
4,329,542 + BWI76_RS20695 0.67 -0.7
4,329,550 - BWI76_RS20695 0.68 -2.4
4,329,748 + -1.2
4,329,874 - -0.6

Or see this region's nucleotide sequence