Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14410

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14400 and BWI76_RS14405 are separated by 120 nucleotidesBWI76_RS14405 and BWI76_RS14410 are separated by 91 nucleotidesBWI76_RS14410 and BWI76_RS14415 are separated by 118 nucleotidesBWI76_RS14415 and BWI76_RS14420 are separated by 17 nucleotides BWI76_RS14400: BWI76_RS14400 - ISNCY family transposase, at 3,008,628 to 3,009,198 _RS14400 BWI76_RS14405: BWI76_RS14405 - steroid Delta-isomerase, at 3,009,319 to 3,009,672 _RS14405 BWI76_RS14410: BWI76_RS14410 - hypothetical protein, at 3,009,764 to 3,009,967 _RS14410 BWI76_RS14415: BWI76_RS14415 - transcriptional regulator, TetR family protein, at 3,010,086 to 3,010,682 _RS14415 BWI76_RS14420: BWI76_RS14420 - hypothetical protein, at 3,010,700 to 3,011,482 _RS14420 Position (kb) 3009 3010Strain fitness (log2 ratio) -2 -1 0 1 2at 3008.909 kb on + strand, within BWI76_RS14400at 3008.909 kb on + strand, within BWI76_RS14400at 3008.959 kb on - strand, within BWI76_RS14400at 3009.019 kb on - strand, within BWI76_RS14400at 3009.084 kb on + strand, within BWI76_RS14400at 3009.096 kb on + strand, within BWI76_RS14400at 3009.096 kb on + strand, within BWI76_RS14400at 3009.096 kb on + strand, within BWI76_RS14400at 3009.096 kb on + strand, within BWI76_RS14400at 3009.096 kb on + strand, within BWI76_RS14400at 3009.130 kb on - strand, within BWI76_RS14400at 3009.130 kb on - strand, within BWI76_RS14400at 3009.178 kb on + strandat 3009.178 kb on + strandat 3009.178 kb on + strandat 3009.251 kb on + strandat 3009.264 kb on - strandat 3009.766 kb on - strandat 3009.812 kb on - strand, within BWI76_RS14410at 3009.822 kb on - strand, within BWI76_RS14410at 3009.822 kb on - strand, within BWI76_RS14410at 3009.822 kb on - strand, within BWI76_RS14410at 3009.848 kb on + strand, within BWI76_RS14410at 3009.856 kb on - strandat 3009.962 kb on + strandat 3009.970 kb on - strandat 3009.970 kb on - strandat 3009.986 kb on + strandat 3009.989 kb on - strandat 3009.994 kb on - strandat 3009.994 kb on - strandat 3009.994 kb on - strandat 3009.994 kb on - strandat 3010.128 kb on + strandat 3010.341 kb on - strand, within BWI76_RS14415at 3010.400 kb on + strand, within BWI76_RS14415at 3010.401 kb on - strand, within BWI76_RS14415at 3010.401 kb on - strand, within BWI76_RS14415at 3010.544 kb on - strand, within BWI76_RS14415at 3010.667 kb on - strandat 3010.757 kb on + strandat 3010.760 kb on - strandat 3010.782 kb on + strand, within BWI76_RS14420at 3010.782 kb on + strand, within BWI76_RS14420at 3010.782 kb on + strand, within BWI76_RS14420at 3010.782 kb on + strand, within BWI76_RS14420at 3010.782 kb on + strand, within BWI76_RS14420at 3010.782 kb on + strand, within BWI76_RS14420at 3010.782 kb on + strand, within BWI76_RS14420at 3010.790 kb on - strand, within BWI76_RS14420at 3010.790 kb on - strand, within BWI76_RS14420at 3010.797 kb on + strand, within BWI76_RS14420at 3010.797 kb on + strand, within BWI76_RS14420at 3010.797 kb on + strand, within BWI76_RS14420at 3010.797 kb on + strand, within BWI76_RS14420at 3010.803 kb on + strand, within BWI76_RS14420at 3010.805 kb on - strand, within BWI76_RS14420at 3010.805 kb on - strand, within BWI76_RS14420at 3010.908 kb on - strand, within BWI76_RS14420at 3010.929 kb on - strand, within BWI76_RS14420at 3010.929 kb on - strand, within BWI76_RS14420at 3010.934 kb on - strand, within BWI76_RS14420at 3010.934 kb on - strand, within BWI76_RS14420at 3010.934 kb on - strand, within BWI76_RS14420at 3010.934 kb on - strand, within BWI76_RS14420at 3010.934 kb on - strand, within BWI76_RS14420at 3010.934 kb on - strand, within BWI76_RS14420at 3010.934 kb on - strand, within BWI76_RS14420

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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3,008,909 + BWI76_RS14400 0.49 +0.8
3,008,909 + BWI76_RS14400 0.49 -1.0
3,008,959 - BWI76_RS14400 0.58 +0.0
3,009,019 - BWI76_RS14400 0.68 +0.3
3,009,084 + BWI76_RS14400 0.80 -1.2
3,009,096 + BWI76_RS14400 0.82 +0.7
3,009,096 + BWI76_RS14400 0.82 -1.3
3,009,096 + BWI76_RS14400 0.82 -0.6
3,009,096 + BWI76_RS14400 0.82 +1.2
3,009,096 + BWI76_RS14400 0.82 -0.2
3,009,130 - BWI76_RS14400 0.88 +0.0
3,009,130 - BWI76_RS14400 0.88 +0.5
3,009,178 + +0.5
3,009,178 + +0.0
3,009,178 + +0.9
3,009,251 + +0.8
3,009,264 - +0.6
3,009,766 - -0.2
3,009,812 - BWI76_RS14410 0.24 +1.8
3,009,822 - BWI76_RS14410 0.28 +0.2
3,009,822 - BWI76_RS14410 0.28 -0.2
3,009,822 - BWI76_RS14410 0.28 -0.9
3,009,848 + BWI76_RS14410 0.41 -0.7
3,009,856 - -0.6
3,009,962 + +0.6
3,009,970 - +0.3
3,009,970 - -0.7
3,009,986 + +1.5
3,009,989 - -0.2
3,009,994 - +0.4
3,009,994 - +1.8
3,009,994 - +0.2
3,009,994 - -0.3
3,010,128 + -0.2
3,010,341 - BWI76_RS14415 0.43 +0.2
3,010,400 + BWI76_RS14415 0.53 +1.1
3,010,401 - BWI76_RS14415 0.53 -1.2
3,010,401 - BWI76_RS14415 0.53 -0.5
3,010,544 - BWI76_RS14415 0.77 +0.8
3,010,667 - -0.8
3,010,757 + +1.6
3,010,760 - -1.0
3,010,782 + BWI76_RS14420 0.10 -2.0
3,010,782 + BWI76_RS14420 0.10 +0.5
3,010,782 + BWI76_RS14420 0.10 -0.4
3,010,782 + BWI76_RS14420 0.10 +1.8
3,010,782 + BWI76_RS14420 0.10 -0.3
3,010,782 + BWI76_RS14420 0.10 +0.0
3,010,782 + BWI76_RS14420 0.10 +0.1
3,010,790 - BWI76_RS14420 0.11 -1.7
3,010,790 - BWI76_RS14420 0.11 -1.2
3,010,797 + BWI76_RS14420 0.12 -0.8
3,010,797 + BWI76_RS14420 0.12 +0.6
3,010,797 + BWI76_RS14420 0.12 -0.8
3,010,797 + BWI76_RS14420 0.12 +2.3
3,010,803 + BWI76_RS14420 0.13 -0.3
3,010,805 - BWI76_RS14420 0.13 +0.2
3,010,805 - BWI76_RS14420 0.13 -1.0
3,010,908 - BWI76_RS14420 0.27 -0.3
3,010,929 - BWI76_RS14420 0.29 +0.5
3,010,929 - BWI76_RS14420 0.29 +1.8
3,010,934 - BWI76_RS14420 0.30 +0.2
3,010,934 - BWI76_RS14420 0.30 +0.7
3,010,934 - BWI76_RS14420 0.30 +0.3
3,010,934 - BWI76_RS14420 0.30 +0.4
3,010,934 - BWI76_RS14420 0.30 -0.1
3,010,934 - BWI76_RS14420 0.30 -0.3
3,010,934 - BWI76_RS14420 0.30 -0.2

Or see this region's nucleotide sequence