Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08095

Experiment: L-Glutamic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS08090 and BWI76_RS08095 are separated by 377 nucleotidesBWI76_RS08095 and BWI76_RS08100 overlap by 1 nucleotidesBWI76_RS08100 and BWI76_RS08105 overlap by 1 nucleotides BWI76_RS08090: BWI76_RS08090 - ShlB-type POTRA domain/hemolysin secretion/activation protein ShlB/FhaC/HecB, at 1,714,319 to 1,715,989 _RS08090 BWI76_RS08095: BWI76_RS08095 - arginine ABC transporter ATP-binding protein, at 1,716,367 to 1,717,092 _RS08095 BWI76_RS08100: BWI76_RS08100 - glutamate/aspartate transporter permease GltK, at 1,717,092 to 1,717,766 _RS08100 BWI76_RS08105: BWI76_RS08105 - glutamate/aspartate ABC transporter permease GltJ, at 1,717,766 to 1,718,506 _RS08105 Position (kb) 1716 1717 1718Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1715.432 kb on + strand, within BWI76_RS08090at 1715.443 kb on + strand, within BWI76_RS08090at 1715.443 kb on + strand, within BWI76_RS08090at 1715.451 kb on - strandat 1715.451 kb on - strand, within BWI76_RS08090at 1715.465 kb on + strand, within BWI76_RS08090at 1715.473 kb on - strand, within BWI76_RS08090at 1715.473 kb on - strand, within BWI76_RS08090at 1715.473 kb on - strand, within BWI76_RS08090at 1715.490 kb on + strand, within BWI76_RS08090at 1715.490 kb on + strand, within BWI76_RS08090at 1715.498 kb on - strand, within BWI76_RS08090at 1715.500 kb on + strand, within BWI76_RS08090at 1715.508 kb on - strand, within BWI76_RS08090at 1715.508 kb on - strand, within BWI76_RS08090at 1715.508 kb on - strand, within BWI76_RS08090at 1715.508 kb on - strand, within BWI76_RS08090at 1715.544 kb on + strand, within BWI76_RS08090at 1715.555 kb on + strand, within BWI76_RS08090at 1715.555 kb on + strand, within BWI76_RS08090at 1715.563 kb on - strand, within BWI76_RS08090at 1715.591 kb on + strand, within BWI76_RS08090at 1715.624 kb on + strand, within BWI76_RS08090at 1715.624 kb on + strand, within BWI76_RS08090at 1715.624 kb on + strand, within BWI76_RS08090at 1715.877 kb on + strandat 1715.877 kb on + strandat 1715.877 kb on + strandat 1715.882 kb on + strandat 1715.885 kb on - strandat 1716.054 kb on + strandat 1716.058 kb on + strandat 1716.069 kb on - strandat 1716.179 kb on + strandat 1716.184 kb on + strandat 1716.184 kb on + strandat 1716.253 kb on + strandat 1716.260 kb on + strandat 1716.292 kb on - strandat 1716.339 kb on - strandat 1716.342 kb on - strandat 1716.372 kb on - strandat 1716.373 kb on - strandat 1716.373 kb on - strandat 1716.385 kb on - strandat 1716.396 kb on - strandat 1716.407 kb on + strandat 1716.407 kb on + strandat 1716.415 kb on - strandat 1716.460 kb on - strand, within BWI76_RS08095at 1716.462 kb on + strand, within BWI76_RS08095at 1716.530 kb on - strand, within BWI76_RS08095at 1716.537 kb on - strand, within BWI76_RS08095at 1716.590 kb on - strand, within BWI76_RS08095at 1716.599 kb on + strand, within BWI76_RS08095at 1716.626 kb on - strand, within BWI76_RS08095at 1716.638 kb on - strand, within BWI76_RS08095at 1716.677 kb on + strand, within BWI76_RS08095at 1716.685 kb on - strand, within BWI76_RS08095at 1716.779 kb on + strand, within BWI76_RS08095at 1716.780 kb on - strand, within BWI76_RS08095at 1716.787 kb on - strand, within BWI76_RS08095at 1716.787 kb on - strand, within BWI76_RS08095at 1716.787 kb on - strand, within BWI76_RS08095at 1716.839 kb on - strand, within BWI76_RS08095at 1716.927 kb on - strand, within BWI76_RS08095at 1716.976 kb on + strand, within BWI76_RS08095at 1717.097 kb on - strandat 1717.246 kb on + strand, within BWI76_RS08100at 1717.357 kb on + strand, within BWI76_RS08100at 1717.357 kb on + strand, within BWI76_RS08100at 1717.365 kb on - strand, within BWI76_RS08100at 1717.365 kb on - strand, within BWI76_RS08100at 1717.386 kb on - strand, within BWI76_RS08100at 1717.699 kb on + strandat 1717.856 kb on + strand, within BWI76_RS08105at 1717.883 kb on + strand, within BWI76_RS08105at 1717.906 kb on - strand, within BWI76_RS08105at 1718.024 kb on - strand, within BWI76_RS08105at 1718.034 kb on - strand, within BWI76_RS08105

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
remove
1,715,432 + BWI76_RS08090 0.67 +1.1
1,715,443 + BWI76_RS08090 0.67 -0.7
1,715,443 + BWI76_RS08090 0.67 +0.3
1,715,451 - +4.3
1,715,451 - BWI76_RS08090 0.68 -0.3
1,715,465 + BWI76_RS08090 0.69 -0.5
1,715,473 - BWI76_RS08090 0.69 -1.6
1,715,473 - BWI76_RS08090 0.69 -1.5
1,715,473 - BWI76_RS08090 0.69 +0.9
1,715,490 + BWI76_RS08090 0.70 -1.7
1,715,490 + BWI76_RS08090 0.70 -0.7
1,715,498 - BWI76_RS08090 0.71 +0.3
1,715,500 + BWI76_RS08090 0.71 +0.5
1,715,508 - BWI76_RS08090 0.71 -0.6
1,715,508 - BWI76_RS08090 0.71 +1.0
1,715,508 - BWI76_RS08090 0.71 +0.4
1,715,508 - BWI76_RS08090 0.71 +0.4
1,715,544 + BWI76_RS08090 0.73 -0.2
1,715,555 + BWI76_RS08090 0.74 -0.6
1,715,555 + BWI76_RS08090 0.74 +0.7
1,715,563 - BWI76_RS08090 0.74 +0.8
1,715,591 + BWI76_RS08090 0.76 -0.8
1,715,624 + BWI76_RS08090 0.78 +0.9
1,715,624 + BWI76_RS08090 0.78 -0.0
1,715,624 + BWI76_RS08090 0.78 -0.8
1,715,877 + -1.6
1,715,877 + +1.8
1,715,877 + +1.0
1,715,882 + +0.8
1,715,885 - -1.3
1,716,054 + -1.2
1,716,058 + -1.3
1,716,069 - -0.4
1,716,179 + +1.7
1,716,184 + -0.7
1,716,184 + -0.6
1,716,253 + +0.4
1,716,260 + +1.4
1,716,292 - -1.1
1,716,339 - +0.7
1,716,342 - +0.4
1,716,372 - -0.8
1,716,373 - -1.3
1,716,373 - -1.0
1,716,385 - -0.2
1,716,396 - -1.5
1,716,407 + +0.4
1,716,407 + -1.6
1,716,415 - -1.7
1,716,460 - BWI76_RS08095 0.13 -3.2
1,716,462 + BWI76_RS08095 0.13 -3.0
1,716,530 - BWI76_RS08095 0.22 -2.2
1,716,537 - BWI76_RS08095 0.23 -2.2
1,716,590 - BWI76_RS08095 0.31 -0.6
1,716,599 + BWI76_RS08095 0.32 -1.0
1,716,626 - BWI76_RS08095 0.36 -1.7
1,716,638 - BWI76_RS08095 0.37 -3.1
1,716,677 + BWI76_RS08095 0.43 -2.0
1,716,685 - BWI76_RS08095 0.44 -2.6
1,716,779 + BWI76_RS08095 0.57 -1.6
1,716,780 - BWI76_RS08095 0.57 -1.2
1,716,787 - BWI76_RS08095 0.58 -2.5
1,716,787 - BWI76_RS08095 0.58 -0.3
1,716,787 - BWI76_RS08095 0.58 -3.8
1,716,839 - BWI76_RS08095 0.65 -2.0
1,716,927 - BWI76_RS08095 0.77 -2.8
1,716,976 + BWI76_RS08095 0.84 -3.1
1,717,097 - -1.3
1,717,246 + BWI76_RS08100 0.23 -0.8
1,717,357 + BWI76_RS08100 0.39 -2.7
1,717,357 + BWI76_RS08100 0.39 -1.4
1,717,365 - BWI76_RS08100 0.40 -1.9
1,717,365 - BWI76_RS08100 0.40 -2.3
1,717,386 - BWI76_RS08100 0.44 -1.8
1,717,699 + -2.2
1,717,856 + BWI76_RS08105 0.12 -2.3
1,717,883 + BWI76_RS08105 0.16 -1.6
1,717,906 - BWI76_RS08105 0.19 -4.8
1,718,024 - BWI76_RS08105 0.35 -0.9
1,718,034 - BWI76_RS08105 0.36 +0.4

Or see this region's nucleotide sequence