Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3075

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3074 and DvMF_3075 are separated by 300 nucleotidesDvMF_3075 and DvMF_3076 overlap by 8 nucleotides DvMF_3074: DvMF_3074 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 3,882,183 to 3,883,274 _3074 DvMF_3075: DvMF_3075 - signal transduction histidine kinase regulating citrate/malate metabolism (RefSeq), at 3,883,575 to 3,884,486 _3075 DvMF_3076: DvMF_3076 - metal dependent phosphohydrolase (RefSeq), at 3,884,479 to 3,885,705 _3076 Position (kb) 3883 3884 3885Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3882.606 kb on + strand, within DvMF_3074at 3882.672 kb on - strand, within DvMF_3074at 3882.711 kb on + strand, within DvMF_3074at 3882.729 kb on + strand, within DvMF_3074at 3882.778 kb on + strand, within DvMF_3074at 3882.813 kb on - strand, within DvMF_3074at 3882.860 kb on + strand, within DvMF_3074at 3882.860 kb on + strand, within DvMF_3074at 3882.908 kb on + strand, within DvMF_3074at 3882.932 kb on + strand, within DvMF_3074at 3882.966 kb on - strand, within DvMF_3074at 3883.008 kb on + strand, within DvMF_3074at 3883.369 kb on + strandat 3883.377 kb on - strandat 3883.647 kb on + strandat 3883.647 kb on + strandat 3883.680 kb on + strand, within DvMF_3075at 3883.849 kb on - strand, within DvMF_3075at 3883.862 kb on - strand, within DvMF_3075at 3883.956 kb on + strand, within DvMF_3075at 3883.987 kb on - strand, within DvMF_3075at 3884.450 kb on + strandat 3884.566 kb on + strandat 3884.649 kb on - strand, within DvMF_3076at 3885.012 kb on + strand, within DvMF_3076at 3885.021 kb on - strand, within DvMF_3076at 3885.183 kb on + strand, within DvMF_3076at 3885.371 kb on - strand, within DvMF_3076

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,882,606 + DvMF_3074 0.39 -2.5
3,882,672 - DvMF_3074 0.45 +0.1
3,882,711 + DvMF_3074 0.48 -0.7
3,882,729 + DvMF_3074 0.50 -1.3
3,882,778 + DvMF_3074 0.54 -0.4
3,882,813 - DvMF_3074 0.58 -0.7
3,882,860 + DvMF_3074 0.62 -1.3
3,882,860 + DvMF_3074 0.62 -1.4
3,882,908 + DvMF_3074 0.66 -0.2
3,882,932 + DvMF_3074 0.69 -1.3
3,882,966 - DvMF_3074 0.72 -0.3
3,883,008 + DvMF_3074 0.76 -1.4
3,883,369 + -0.3
3,883,377 - -0.3
3,883,647 + -1.1
3,883,647 + -2.5
3,883,680 + DvMF_3075 0.12 -1.1
3,883,849 - DvMF_3075 0.30 -3.9
3,883,862 - DvMF_3075 0.31 -1.1
3,883,956 + DvMF_3075 0.42 -0.4
3,883,987 - DvMF_3075 0.45 -0.5
3,884,450 + -1.0
3,884,566 + -0.7
3,884,649 - DvMF_3076 0.14 -1.1
3,885,012 + DvMF_3076 0.43 -0.3
3,885,021 - DvMF_3076 0.44 -0.7
3,885,183 + DvMF_3076 0.57 -0.7
3,885,371 - DvMF_3076 0.73 -0.8

Or see this region's nucleotide sequence