Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2988

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2986 and DvMF_2987 are separated by 207 nucleotidesDvMF_2987 and DvMF_2988 are separated by 360 nucleotidesDvMF_2988 and DvMF_R0076 are separated by 313 nucleotidesDvMF_R0076 and DvMF_2989 are separated by 101 nucleotides DvMF_2986: DvMF_2986 - multi-sensor hybrid histidine kinase (RefSeq), at 3,762,159 to 3,765,845 _2986 DvMF_2987: DvMF_2987 - EF hand domain-containing protein (RefSeq), at 3,766,053 to 3,766,406 _2987 DvMF_2988: DvMF_2988 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 3,766,767 to 3,768,821 _2988 DvMF_R0076: DvMF_R0076 - tRNA-Asn (RefSeq), at 3,769,135 to 3,769,210 _R0076 DvMF_2989: DvMF_2989 - Na+/H+ antiporter NhaA (RefSeq), at 3,769,312 to 3,770,694 _2989 Position (kb) 3766 3767 3768 3769Strain fitness (log2 ratio) -2 -1 0 1at 3765.885 kb on - strandat 3766.055 kb on + strandat 3766.063 kb on - strandat 3766.087 kb on - strandat 3766.104 kb on - strand, within DvMF_2987at 3766.374 kb on - strandat 3766.508 kb on + strandat 3766.516 kb on - strandat 3766.545 kb on - strandat 3766.555 kb on - strandat 3766.685 kb on + strandat 3766.782 kb on - strandat 3766.782 kb on - strandat 3766.938 kb on + strandat 3766.970 kb on + strandat 3767.055 kb on + strand, within DvMF_2988at 3767.258 kb on + strand, within DvMF_2988at 3767.307 kb on - strand, within DvMF_2988at 3767.345 kb on + strand, within DvMF_2988at 3767.410 kb on + strand, within DvMF_2988at 3767.680 kb on - strand, within DvMF_2988at 3767.923 kb on + strand, within DvMF_2988at 3767.923 kb on + strand, within DvMF_2988at 3767.976 kb on - strand, within DvMF_2988at 3767.981 kb on - strand, within DvMF_2988at 3768.059 kb on - strand, within DvMF_2988at 3768.059 kb on - strand, within DvMF_2988at 3768.279 kb on - strand, within DvMF_2988at 3768.414 kb on - strand, within DvMF_2988at 3768.475 kb on - strand, within DvMF_2988at 3768.495 kb on - strand, within DvMF_2988at 3768.559 kb on + strand, within DvMF_2988at 3768.631 kb on + strandat 3768.739 kb on + strandat 3768.789 kb on + strandat 3768.918 kb on + strandat 3768.926 kb on - strandat 3769.049 kb on - strandat 3769.340 kb on + strandat 3769.348 kb on - strandat 3769.413 kb on + strandat 3769.422 kb on + strandat 3769.423 kb on + strandat 3769.437 kb on + strandat 3769.450 kb on - strandat 3769.656 kb on + strand, within DvMF_2989

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,765,885 - -1.3
3,766,055 + -0.9
3,766,063 - -0.6
3,766,087 - -0.4
3,766,104 - DvMF_2987 0.14 +0.2
3,766,374 - -0.3
3,766,508 + -0.5
3,766,516 - -0.6
3,766,545 - -0.2
3,766,555 - -1.4
3,766,685 + -0.4
3,766,782 - -0.1
3,766,782 - +0.1
3,766,938 + -0.3
3,766,970 + -1.2
3,767,055 + DvMF_2988 0.14 -1.1
3,767,258 + DvMF_2988 0.24 -0.4
3,767,307 - DvMF_2988 0.26 -0.8
3,767,345 + DvMF_2988 0.28 -1.1
3,767,410 + DvMF_2988 0.31 -0.3
3,767,680 - DvMF_2988 0.44 +0.3
3,767,923 + DvMF_2988 0.56 -0.2
3,767,923 + DvMF_2988 0.56 -0.4
3,767,976 - DvMF_2988 0.59 -0.6
3,767,981 - DvMF_2988 0.59 -0.1
3,768,059 - DvMF_2988 0.63 -0.8
3,768,059 - DvMF_2988 0.63 -1.1
3,768,279 - DvMF_2988 0.74 -1.8
3,768,414 - DvMF_2988 0.80 -1.3
3,768,475 - DvMF_2988 0.83 +0.7
3,768,495 - DvMF_2988 0.84 -0.1
3,768,559 + DvMF_2988 0.87 -0.9
3,768,631 + -0.5
3,768,739 + -0.7
3,768,789 + -1.2
3,768,918 + -0.3
3,768,926 - -1.3
3,769,049 - -0.1
3,769,340 + -0.1
3,769,348 - -0.1
3,769,413 + +0.3
3,769,422 + -0.5
3,769,423 + -2.5
3,769,437 + -0.8
3,769,450 - -0.9
3,769,656 + DvMF_2989 0.25 -0.5

Or see this region's nucleotide sequence