Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2342

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2340 and DvMF_2341 are separated by 568 nucleotidesDvMF_2341 and DvMF_2342 are separated by 28 nucleotidesDvMF_2342 and DvMF_2343 are separated by 31 nucleotidesDvMF_2343 and DvMF_2344 are separated by 76 nucleotides DvMF_2340: DvMF_2340 - Sigma 54 interacting domain protein (RefSeq), at 2,949,515 to 2,952,328 _2340 DvMF_2341: DvMF_2341 - hypothetical protein (RefSeq), at 2,952,897 to 2,953,190 _2341 DvMF_2342: DvMF_2342 - protein of unknown function DUF81 (RefSeq), at 2,953,219 to 2,954,271 _2342 DvMF_2343: DvMF_2343 - lipoprotein, putative (RefSeq), at 2,954,303 to 2,954,908 _2343 DvMF_2344: DvMF_2344 - hypothetical protein (RefSeq), at 2,954,985 to 2,955,278 _2344 Position (kb) 2953 2954 2955Strain fitness (log2 ratio) -2 -1 0 1 2at 2953.024 kb on + strand, within DvMF_2341at 2953.201 kb on + strandat 2953.427 kb on + strand, within DvMF_2342at 2953.759 kb on + strand, within DvMF_2342at 2953.764 kb on + strand, within DvMF_2342at 2953.863 kb on + strand, within DvMF_2342at 2954.046 kb on + strand, within DvMF_2342at 2954.071 kb on + strand, within DvMF_2342at 2954.135 kb on - strand, within DvMF_2342at 2954.142 kb on + strand, within DvMF_2342at 2954.349 kb on + strandat 2954.369 kb on - strand, within DvMF_2343at 2954.432 kb on + strand, within DvMF_2343at 2954.490 kb on + strand, within DvMF_2343at 2954.490 kb on + strand, within DvMF_2343at 2954.490 kb on + strand, within DvMF_2343at 2954.498 kb on - strand, within DvMF_2343at 2954.498 kb on - strand, within DvMF_2343at 2954.848 kb on + strandat 2955.011 kb on - strandat 2955.044 kb on + strand, within DvMF_2344at 2955.144 kb on + strand, within DvMF_2344at 2955.152 kb on - strand, within DvMF_2344

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
2,953,024 + DvMF_2341 0.43 -0.5
2,953,201 + -0.3
2,953,427 + DvMF_2342 0.20 -0.6
2,953,759 + DvMF_2342 0.51 -1.1
2,953,764 + DvMF_2342 0.52 -0.8
2,953,863 + DvMF_2342 0.61 +2.3
2,954,046 + DvMF_2342 0.79 -0.4
2,954,071 + DvMF_2342 0.81 -0.7
2,954,135 - DvMF_2342 0.87 -1.1
2,954,142 + DvMF_2342 0.88 -1.1
2,954,349 + -1.8
2,954,369 - DvMF_2343 0.11 -1.1
2,954,432 + DvMF_2343 0.21 -0.7
2,954,490 + DvMF_2343 0.31 -0.8
2,954,490 + DvMF_2343 0.31 -0.7
2,954,490 + DvMF_2343 0.31 -0.9
2,954,498 - DvMF_2343 0.32 -0.9
2,954,498 - DvMF_2343 0.32 -1.7
2,954,848 + -0.8
2,955,011 - -0.4
2,955,044 + DvMF_2344 0.20 -0.3
2,955,144 + DvMF_2344 0.54 -0.9
2,955,152 - DvMF_2344 0.57 -0.8

Or see this region's nucleotide sequence