Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1749

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1748 and DvMF_1749 are separated by 264 nucleotidesDvMF_1749 and DvMF_1750 are separated by 34 nucleotides DvMF_1748: DvMF_1748 - 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq), at 2,135,432 to 2,136,784 _1748 DvMF_1749: DvMF_1749 - prephenate dehydratase (RefSeq), at 2,137,049 to 2,138,305 _1749 DvMF_1750: DvMF_1750 - 3-dehydroquinate synthase (RefSeq), at 2,138,340 to 2,139,311 _1750 Position (kb) 2137 2138 2139Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2136.853 kb on - strandat 2136.899 kb on - strandat 2137.107 kb on + strandat 2137.300 kb on - strand, within DvMF_1749at 2137.316 kb on + strand, within DvMF_1749at 2137.316 kb on + strand, within DvMF_1749at 2137.324 kb on - strand, within DvMF_1749

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,136,853 - -0.3
2,136,899 - -0.6
2,137,107 + -4.4
2,137,300 - DvMF_1749 0.20 -4.1
2,137,316 + DvMF_1749 0.21 -3.3
2,137,316 + DvMF_1749 0.21 -2.7
2,137,324 - DvMF_1749 0.22 -2.6

Or see this region's nucleotide sequence