Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1542 and DvMF_1543 are separated by 346 nucleotides DvMF_1543 and DvMF_1544 are separated by 559 nucleotides
DvMF_1542: DvMF_1542 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,903,359 to 1,904,237
_1542
DvMF_1543: DvMF_1543 - rare lipoprotein A (RefSeq), at 1,904,584 to 1,905,237
_1543
DvMF_1544: DvMF_1544 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 1,905,797 to 1,908,016
_1544
Position (kb)
1904
1905
1906 Strain fitness (log2 ratio)
-1
0
1 at 1903.755 kb on + strand, within DvMF_1542 at 1903.781 kb on - strand, within DvMF_1542 at 1903.797 kb on - strand, within DvMF_1542 at 1903.808 kb on - strand, within DvMF_1542 at 1903.888 kb on + strand, within DvMF_1542 at 1903.896 kb on - strand, within DvMF_1542 at 1904.249 kb on - strand at 1904.447 kb on - strand at 1904.936 kb on + strand, within DvMF_1543 at 1905.325 kb on + strand at 1905.481 kb on + strand at 1905.534 kb on - strand at 1905.554 kb on + strand at 1905.586 kb on + strand at 1905.592 kb on - strand at 1905.701 kb on - strand at 1905.890 kb on - strand at 1906.048 kb on + strand, within DvMF_1544 at 1906.157 kb on + strand, within DvMF_1544 at 1906.176 kb on + strand, within DvMF_1544 at 1906.220 kb on + strand, within DvMF_1544 at 1906.233 kb on + strand, within DvMF_1544
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,903,755 + DvMF_1542 0.45 -0.3 1,903,781 - DvMF_1542 0.48 -0.5 1,903,797 - DvMF_1542 0.50 -1.1 1,903,808 - DvMF_1542 0.51 -0.8 1,903,888 + DvMF_1542 0.60 -1.0 1,903,896 - DvMF_1542 0.61 -0.1 1,904,249 - -0.1 1,904,447 - -1.2 1,904,936 + DvMF_1543 0.54 -0.6 1,905,325 + -0.7 1,905,481 + -0.5 1,905,534 - -0.3 1,905,554 + -0.3 1,905,586 + -0.8 1,905,592 - -0.3 1,905,701 - -0.1 1,905,890 - -0.2 1,906,048 + DvMF_1544 0.11 -0.0 1,906,157 + DvMF_1544 0.16 +0.8 1,906,176 + DvMF_1544 0.17 -0.2 1,906,220 + DvMF_1544 0.19 -0.2 1,906,233 + DvMF_1544 0.20 -0.3
Or see this region's nucleotide sequence