Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1464 and DvMF_1465 are separated by 586 nucleotides DvMF_1465 and DvMF_1466 are separated by 257 nucleotides DvMF_1466 and DvMF_1467 are separated by 369 nucleotides
DvMF_1464: DvMF_1464 - Homocysteine formation from aspartate semialdehyde (DUF39 component) (from data) , at 1,794,909 to 1,796,081
_1464
DvMF_1465: DvMF_1465 - hypothetical protein (RefSeq), at 1,796,668 to 1,797,522
_1465
DvMF_1466: DvMF_1466 - hypothetical protein (RefSeq), at 1,797,780 to 1,797,890
_1466
DvMF_1467: DvMF_1467 - regulatory protein, FmdB family (RefSeq), at 1,798,260 to 1,798,676
_1467
Position (kb)
1796
1797
1798 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1795.692 kb on - strand, within DvMF_1464 at 1795.699 kb on - strand, within DvMF_1464 at 1795.993 kb on + strand at 1796.001 kb on - strand at 1796.083 kb on + strand at 1796.260 kb on + strand at 1796.485 kb on + strand at 1796.515 kb on + strand at 1796.520 kb on - strand at 1796.608 kb on - strand at 1796.740 kb on - strand at 1796.899 kb on - strand, within DvMF_1465 at 1797.108 kb on + strand, within DvMF_1465 at 1797.306 kb on - strand, within DvMF_1465 at 1797.449 kb on - strand at 1797.708 kb on + strand at 1797.760 kb on + strand at 1797.884 kb on + strand at 1797.892 kb on - strand at 1798.187 kb on - strand at 1798.224 kb on - strand at 1798.350 kb on + strand, within DvMF_1467
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,795,692 - DvMF_1464 0.67 -4.0 1,795,699 - DvMF_1464 0.67 -6.1 1,795,993 + -5.6 1,796,001 - -1.7 1,796,083 + -0.7 1,796,260 + -0.7 1,796,485 + -0.6 1,796,515 + -0.7 1,796,520 - +0.1 1,796,608 - +0.1 1,796,740 - -0.1 1,796,899 - DvMF_1465 0.27 -0.7 1,797,108 + DvMF_1465 0.51 -1.3 1,797,306 - DvMF_1465 0.75 -0.7 1,797,449 - -2.2 1,797,708 + -0.6 1,797,760 + -0.6 1,797,884 + +0.3 1,797,892 - +0.3 1,798,187 - +0.1 1,798,224 - -0.7 1,798,350 + DvMF_1467 0.22 -0.8
Or see this region's nucleotide sequence