Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1088 and DvMF_1089 overlap by 4 nucleotides DvMF_1089 and DvMF_1090 are separated by 607 nucleotides
DvMF_1088: DvMF_1088 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 1,326,701 to 1,329,169
_1088
DvMF_1089: DvMF_1089 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 1,329,166 to 1,331,772
_1089
DvMF_1090: DvMF_1090 - hypothetical protein (RefSeq), at 1,332,380 to 1,333,438
_1090
Position (kb)
1329
1330
1331
1332 Strain fitness (log2 ratio)
-2
-1
0
1 at 1328.414 kb on - strand, within DvMF_1088 at 1328.473 kb on - strand, within DvMF_1088 at 1328.581 kb on + strand, within DvMF_1088 at 1328.851 kb on + strand, within DvMF_1088 at 1328.948 kb on - strand at 1329.018 kb on - strand at 1329.336 kb on + strand at 1329.390 kb on + strand at 1329.393 kb on - strand at 1329.559 kb on + strand, within DvMF_1089 at 1329.567 kb on - strand, within DvMF_1089 at 1329.604 kb on - strand, within DvMF_1089 at 1329.658 kb on + strand, within DvMF_1089 at 1329.779 kb on + strand, within DvMF_1089 at 1329.840 kb on + strand, within DvMF_1089 at 1329.848 kb on - strand, within DvMF_1089 at 1330.153 kb on + strand, within DvMF_1089 at 1330.253 kb on + strand, within DvMF_1089 at 1330.261 kb on - strand, within DvMF_1089 at 1330.436 kb on - strand, within DvMF_1089 at 1330.638 kb on - strand, within DvMF_1089 at 1330.657 kb on + strand, within DvMF_1089 at 1330.687 kb on + strand, within DvMF_1089 at 1330.700 kb on - strand, within DvMF_1089 at 1330.902 kb on - strand, within DvMF_1089 at 1331.152 kb on - strand, within DvMF_1089 at 1331.157 kb on - strand, within DvMF_1089 at 1331.183 kb on - strand, within DvMF_1089 at 1331.388 kb on + strand, within DvMF_1089 at 1331.651 kb on + strand at 1332.107 kb on - strand at 1332.550 kb on - strand, within DvMF_1090 at 1332.681 kb on - strand, within DvMF_1090 at 1332.690 kb on + strand, within DvMF_1090 at 1332.750 kb on - strand, within DvMF_1090
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,328,414 - DvMF_1088 0.69 -1.5 1,328,473 - DvMF_1088 0.72 -1.5 1,328,581 + DvMF_1088 0.76 -0.6 1,328,851 + DvMF_1088 0.87 -1.3 1,328,948 - -1.6 1,329,018 - -1.7 1,329,336 + -0.3 1,329,390 + -2.0 1,329,393 - -1.3 1,329,559 + DvMF_1089 0.15 -1.4 1,329,567 - DvMF_1089 0.15 -1.0 1,329,604 - DvMF_1089 0.17 -1.4 1,329,658 + DvMF_1089 0.19 -1.1 1,329,779 + DvMF_1089 0.24 -0.1 1,329,840 + DvMF_1089 0.26 -0.9 1,329,848 - DvMF_1089 0.26 -1.6 1,330,153 + DvMF_1089 0.38 -1.3 1,330,253 + DvMF_1089 0.42 -1.1 1,330,261 - DvMF_1089 0.42 -1.1 1,330,436 - DvMF_1089 0.49 -1.4 1,330,638 - DvMF_1089 0.56 -1.6 1,330,657 + DvMF_1089 0.57 -1.3 1,330,687 + DvMF_1089 0.58 -0.7 1,330,700 - DvMF_1089 0.59 -1.0 1,330,902 - DvMF_1089 0.67 -1.5 1,331,152 - DvMF_1089 0.76 +0.1 1,331,157 - DvMF_1089 0.76 +0.5 1,331,183 - DvMF_1089 0.77 -1.1 1,331,388 + DvMF_1089 0.85 -1.0 1,331,651 + -0.5 1,332,107 - -0.4 1,332,550 - DvMF_1090 0.16 +0.3 1,332,681 - DvMF_1090 0.28 -0.3 1,332,690 + DvMF_1090 0.29 -0.3 1,332,750 - DvMF_1090 0.35 -0.3
Or see this region's nucleotide sequence