Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1089

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1088 and DvMF_1089 overlap by 4 nucleotidesDvMF_1089 and DvMF_1090 are separated by 607 nucleotides DvMF_1088: DvMF_1088 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 1,326,701 to 1,329,169 _1088 DvMF_1089: DvMF_1089 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 1,329,166 to 1,331,772 _1089 DvMF_1090: DvMF_1090 - hypothetical protein (RefSeq), at 1,332,380 to 1,333,438 _1090 Position (kb) 1329 1330 1331 1332Strain fitness (log2 ratio) -2 -1 0 1at 1328.414 kb on - strand, within DvMF_1088at 1328.473 kb on - strand, within DvMF_1088at 1328.581 kb on + strand, within DvMF_1088at 1328.851 kb on + strand, within DvMF_1088at 1328.948 kb on - strandat 1329.018 kb on - strandat 1329.336 kb on + strandat 1329.390 kb on + strandat 1329.393 kb on - strandat 1329.559 kb on + strand, within DvMF_1089at 1329.567 kb on - strand, within DvMF_1089at 1329.604 kb on - strand, within DvMF_1089at 1329.658 kb on + strand, within DvMF_1089at 1329.779 kb on + strand, within DvMF_1089at 1329.840 kb on + strand, within DvMF_1089at 1329.848 kb on - strand, within DvMF_1089at 1330.153 kb on + strand, within DvMF_1089at 1330.253 kb on + strand, within DvMF_1089at 1330.261 kb on - strand, within DvMF_1089at 1330.436 kb on - strand, within DvMF_1089at 1330.638 kb on - strand, within DvMF_1089at 1330.657 kb on + strand, within DvMF_1089at 1330.687 kb on + strand, within DvMF_1089at 1330.700 kb on - strand, within DvMF_1089at 1330.902 kb on - strand, within DvMF_1089at 1331.152 kb on - strand, within DvMF_1089at 1331.157 kb on - strand, within DvMF_1089at 1331.183 kb on - strand, within DvMF_1089at 1331.388 kb on + strand, within DvMF_1089at 1331.651 kb on + strandat 1332.107 kb on - strandat 1332.550 kb on - strand, within DvMF_1090at 1332.681 kb on - strand, within DvMF_1090at 1332.690 kb on + strand, within DvMF_1090at 1332.750 kb on - strand, within DvMF_1090

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,328,414 - DvMF_1088 0.69 -1.5
1,328,473 - DvMF_1088 0.72 -1.5
1,328,581 + DvMF_1088 0.76 -0.6
1,328,851 + DvMF_1088 0.87 -1.3
1,328,948 - -1.6
1,329,018 - -1.7
1,329,336 + -0.3
1,329,390 + -2.0
1,329,393 - -1.3
1,329,559 + DvMF_1089 0.15 -1.4
1,329,567 - DvMF_1089 0.15 -1.0
1,329,604 - DvMF_1089 0.17 -1.4
1,329,658 + DvMF_1089 0.19 -1.1
1,329,779 + DvMF_1089 0.24 -0.1
1,329,840 + DvMF_1089 0.26 -0.9
1,329,848 - DvMF_1089 0.26 -1.6
1,330,153 + DvMF_1089 0.38 -1.3
1,330,253 + DvMF_1089 0.42 -1.1
1,330,261 - DvMF_1089 0.42 -1.1
1,330,436 - DvMF_1089 0.49 -1.4
1,330,638 - DvMF_1089 0.56 -1.6
1,330,657 + DvMF_1089 0.57 -1.3
1,330,687 + DvMF_1089 0.58 -0.7
1,330,700 - DvMF_1089 0.59 -1.0
1,330,902 - DvMF_1089 0.67 -1.5
1,331,152 - DvMF_1089 0.76 +0.1
1,331,157 - DvMF_1089 0.76 +0.5
1,331,183 - DvMF_1089 0.77 -1.1
1,331,388 + DvMF_1089 0.85 -1.0
1,331,651 + -0.5
1,332,107 - -0.4
1,332,550 - DvMF_1090 0.16 +0.3
1,332,681 - DvMF_1090 0.28 -0.3
1,332,690 + DvMF_1090 0.29 -0.3
1,332,750 - DvMF_1090 0.35 -0.3

Or see this region's nucleotide sequence