Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0518

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0517 and DvMF_0518 are separated by 190 nucleotidesDvMF_0518 and DvMF_0519 are separated by 76 nucleotides DvMF_0517: DvMF_0517 - alanine dehydrogenase (RefSeq), at 610,546 to 611,655 _0517 DvMF_0518: DvMF_0518 - ABC transporter related (RefSeq), at 611,846 to 612,601 _0518 DvMF_0519: DvMF_0519 - ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein (RefSeq), at 612,678 to 613,742 _0519 Position (kb) 611 612 613Strain fitness (log2 ratio) -1 0 1at 611.311 kb on - strand, within DvMF_0517at 611.463 kb on + strand, within DvMF_0517at 611.489 kb on - strand, within DvMF_0517at 611.503 kb on + strand, within DvMF_0517at 611.504 kb on - strand, within DvMF_0517at 611.566 kb on + strandat 611.647 kb on + strandat 611.687 kb on - strandat 611.788 kb on + strandat 611.934 kb on + strand, within DvMF_0518at 611.944 kb on + strand, within DvMF_0518at 612.021 kb on - strand, within DvMF_0518at 612.069 kb on + strand, within DvMF_0518at 612.234 kb on + strand, within DvMF_0518at 612.449 kb on + strand, within DvMF_0518at 612.476 kb on - strand, within DvMF_0518at 612.831 kb on + strand, within DvMF_0519at 612.901 kb on - strand, within DvMF_0519at 612.915 kb on - strand, within DvMF_0519at 613.047 kb on - strand, within DvMF_0519at 613.061 kb on + strand, within DvMF_0519at 613.137 kb on - strand, within DvMF_0519at 613.234 kb on - strand, within DvMF_0519at 613.440 kb on - strand, within DvMF_0519at 613.529 kb on + strand, within DvMF_0519

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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611,311 - DvMF_0517 0.69 -0.2
611,463 + DvMF_0517 0.83 -0.0
611,489 - DvMF_0517 0.85 +0.4
611,503 + DvMF_0517 0.86 -0.4
611,504 - DvMF_0517 0.86 -0.6
611,566 + +0.1
611,647 + +0.3
611,687 - -1.3
611,788 + +0.7
611,934 + DvMF_0518 0.12 -0.0
611,944 + DvMF_0518 0.13 -0.8
612,021 - DvMF_0518 0.23 -0.7
612,069 + DvMF_0518 0.29 -0.3
612,234 + DvMF_0518 0.51 -1.0
612,449 + DvMF_0518 0.80 -1.1
612,476 - DvMF_0518 0.83 -0.7
612,831 + DvMF_0519 0.14 -0.9
612,901 - DvMF_0519 0.21 +0.2
612,915 - DvMF_0519 0.22 -0.2
613,047 - DvMF_0519 0.35 -0.3
613,061 + DvMF_0519 0.36 -1.0
613,137 - DvMF_0519 0.43 -0.5
613,234 - DvMF_0519 0.52 -1.1
613,440 - DvMF_0519 0.72 +0.1
613,529 + DvMF_0519 0.80 -0.5

Or see this region's nucleotide sequence