Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4120

Experiment: m.b. Cephalothin 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4119 and Dshi_4120 overlap by 4 nucleotidesDshi_4120 and Dshi_4121 are separated by 147 nucleotides Dshi_4119: Dshi_4119 - NAD-dependent epimerase/dehydratase (RefSeq), at 50,748 to 51,629 _4119 Dshi_4120: Dshi_4120 - sugar transferase (RefSeq), at 51,626 to 52,234 _4120 Dshi_4121: Dshi_4121 - glycosyl transferase family 2 (RefSeq), at 52,382 to 54,934 _4121 Position (kb) 51 52 53Strain fitness (log2 ratio) -1 0 1 2at 50.672 kb on + strandat 50.680 kb on - strandat 50.701 kb on - strandat 50.766 kb on + strandat 51.188 kb on + strand, within Dshi_4119at 51.189 kb on + strand, within Dshi_4119at 51.375 kb on + strand, within Dshi_4119at 51.375 kb on + strand, within Dshi_4119at 52.118 kb on + strand, within Dshi_4120at 52.146 kb on + strand, within Dshi_4120at 52.273 kb on + strandat 52.306 kb on - strandat 52.390 kb on + strandat 52.489 kb on - strandat 52.631 kb on + strandat 52.822 kb on - strand, within Dshi_4121at 52.832 kb on + strand, within Dshi_4121at 52.857 kb on - strand, within Dshi_4121at 52.862 kb on - strand, within Dshi_4121at 53.008 kb on - strand, within Dshi_4121at 53.014 kb on - strand, within Dshi_4121at 53.048 kb on + strand, within Dshi_4121at 53.056 kb on - strand, within Dshi_4121at 53.056 kb on - strand, within Dshi_4121at 53.056 kb on - strand, within Dshi_4121at 53.062 kb on + strand, within Dshi_4121

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml
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50,672 + +0.5
50,680 - +0.0
50,701 - +0.5
50,766 + +0.2
51,188 + Dshi_4119 0.50 -0.3
51,189 + Dshi_4119 0.50 +0.2
51,375 + Dshi_4119 0.71 +0.2
51,375 + Dshi_4119 0.71 +0.1
52,118 + Dshi_4120 0.81 -0.9
52,146 + Dshi_4120 0.85 -1.2
52,273 + -0.4
52,306 - +0.3
52,390 + +0.8
52,489 - +0.4
52,631 + +0.4
52,822 - Dshi_4121 0.17 +2.0
52,832 + Dshi_4121 0.18 -0.2
52,857 - Dshi_4121 0.19 -0.1
52,862 - Dshi_4121 0.19 +0.3
53,008 - Dshi_4121 0.25 +0.2
53,014 - Dshi_4121 0.25 -0.0
53,048 + Dshi_4121 0.26 -0.5
53,056 - Dshi_4121 0.26 +1.9
53,056 - Dshi_4121 0.26 -0.2
53,056 - Dshi_4121 0.26 -0.1
53,062 + Dshi_4121 0.27 -0.1

Or see this region's nucleotide sequence