Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4077

Experiment: m.b. Cephalothin 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_4076 and Dshi_4077 are separated by 16 nucleotidesDshi_4077 and Dshi_4078 are separated by 35 nucleotidesDshi_4078 and Dshi_4079 are separated by 193 nucleotides Dshi_4076: Dshi_4076 - capsule polysaccharide export protein (RefSeq), at 9,370 to 10,845 _4076 Dshi_4077: Dshi_4077 - ABC transporter related (RefSeq), at 10,862 to 11,521 _4077 Dshi_4078: Dshi_4078 - hypothetical protein (RefSeq), at 11,557 to 11,931 _4078 Dshi_4079: Dshi_4079 - transposase IS4 family protein (RefSeq), at 12,125 to 13,507 _4079 Position (kb) 10 11 12Strain fitness (log2 ratio) -1 0 1at 10.014 kb on + strand, within Dshi_4076at 10.295 kb on - strand, within Dshi_4076at 10.456 kb on - strand, within Dshi_4076at 10.581 kb on - strand, within Dshi_4076at 11.022 kb on + strand, within Dshi_4077at 11.408 kb on - strand, within Dshi_4077at 11.520 kb on + strandat 11.523 kb on - strandat 11.621 kb on - strand, within Dshi_4078at 11.627 kb on + strand, within Dshi_4078at 11.637 kb on + strand, within Dshi_4078at 11.664 kb on + strand, within Dshi_4078at 11.665 kb on + strand, within Dshi_4078at 11.709 kb on + strand, within Dshi_4078at 11.727 kb on - strand, within Dshi_4078at 11.757 kb on - strand, within Dshi_4078at 11.762 kb on - strand, within Dshi_4078at 11.794 kb on - strand, within Dshi_4078at 11.854 kb on + strand, within Dshi_4078at 11.865 kb on + strand, within Dshi_4078at 11.870 kb on + strand, within Dshi_4078at 11.909 kb on + strandat 11.927 kb on - strandat 11.933 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml
remove
10,014 + Dshi_4076 0.44 +0.2
10,295 - Dshi_4076 0.63 -0.4
10,456 - Dshi_4076 0.74 +0.1
10,581 - Dshi_4076 0.82 -0.2
11,022 + Dshi_4077 0.24 -1.4
11,408 - Dshi_4077 0.83 -0.9
11,520 + -0.4
11,523 - -0.6
11,621 - Dshi_4078 0.17 -1.4
11,627 + Dshi_4078 0.19 -0.5
11,637 + Dshi_4078 0.21 +0.1
11,664 + Dshi_4078 0.29 -0.0
11,665 + Dshi_4078 0.29 +1.2
11,709 + Dshi_4078 0.41 +0.5
11,727 - Dshi_4078 0.45 -0.8
11,757 - Dshi_4078 0.53 -0.3
11,762 - Dshi_4078 0.55 +0.3
11,794 - Dshi_4078 0.63 -0.1
11,854 + Dshi_4078 0.79 +0.4
11,865 + Dshi_4078 0.82 +0.1
11,870 + Dshi_4078 0.83 -0.2
11,909 + +0.6
11,927 - -0.6
11,933 - -0.9

Or see this region's nucleotide sequence