Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4076 and Dshi_4077 are separated by 16 nucleotides Dshi_4077 and Dshi_4078 are separated by 35 nucleotides Dshi_4078 and Dshi_4079 are separated by 193 nucleotides
Dshi_4076: Dshi_4076 - capsule polysaccharide export protein (RefSeq), at 9,370 to 10,845
_4076
Dshi_4077: Dshi_4077 - ABC transporter related (RefSeq), at 10,862 to 11,521
_4077
Dshi_4078: Dshi_4078 - hypothetical protein (RefSeq), at 11,557 to 11,931
_4078
Dshi_4079: Dshi_4079 - transposase IS4 family protein (RefSeq), at 12,125 to 13,507
_4079
Position (kb)
10
11
12 Strain fitness (log2 ratio)
-1
0
1 at 10.014 kb on + strand, within Dshi_4076 at 10.295 kb on - strand, within Dshi_4076 at 10.456 kb on - strand, within Dshi_4076 at 10.581 kb on - strand, within Dshi_4076 at 11.022 kb on + strand, within Dshi_4077 at 11.408 kb on - strand, within Dshi_4077 at 11.520 kb on + strand at 11.523 kb on - strand at 11.621 kb on - strand, within Dshi_4078 at 11.627 kb on + strand, within Dshi_4078 at 11.637 kb on + strand, within Dshi_4078 at 11.664 kb on + strand, within Dshi_4078 at 11.665 kb on + strand, within Dshi_4078 at 11.709 kb on + strand, within Dshi_4078 at 11.727 kb on - strand, within Dshi_4078 at 11.757 kb on - strand, within Dshi_4078 at 11.762 kb on - strand, within Dshi_4078 at 11.794 kb on - strand, within Dshi_4078 at 11.854 kb on + strand, within Dshi_4078 at 11.865 kb on + strand, within Dshi_4078 at 11.870 kb on + strand, within Dshi_4078 at 11.909 kb on + strand at 11.927 kb on - strand at 11.933 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 10,014 + Dshi_4076 0.44 +0.2 10,295 - Dshi_4076 0.63 -0.4 10,456 - Dshi_4076 0.74 +0.1 10,581 - Dshi_4076 0.82 -0.2 11,022 + Dshi_4077 0.24 -1.4 11,408 - Dshi_4077 0.83 -0.9 11,520 + -0.4 11,523 - -0.6 11,621 - Dshi_4078 0.17 -1.4 11,627 + Dshi_4078 0.19 -0.5 11,637 + Dshi_4078 0.21 +0.1 11,664 + Dshi_4078 0.29 -0.0 11,665 + Dshi_4078 0.29 +1.2 11,709 + Dshi_4078 0.41 +0.5 11,727 - Dshi_4078 0.45 -0.8 11,757 - Dshi_4078 0.53 -0.3 11,762 - Dshi_4078 0.55 +0.3 11,794 - Dshi_4078 0.63 -0.1 11,854 + Dshi_4078 0.79 +0.4 11,865 + Dshi_4078 0.82 +0.1 11,870 + Dshi_4078 0.83 -0.2 11,909 + +0.6 11,927 - -0.6 11,933 - -0.9
Or see this region's nucleotide sequence