Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3359

Experiment: m.b. Cephalothin 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Cephalothin 0.0001 mg/ml
3,531,370	+				+0.8
3,531,370	+				+0.1
3,531,380	-				+0.7
3,531,383	+				+0.7
3,531,437	+				-0.1
3,531,437	+				-1.2
3,531,437	+				-0.3
3,531,437	+				+0.9
3,531,438	+				+0.3
3,531,441	-				+0.0
3,531,442	+				-1.3
3,531,442	+				+2.0
3,531,445	-				-0.1
3,531,447	+				+0.1
3,531,447	+				+0.0
3,531,447	+				-0.2
3,531,447	+				-0.4
3,531,447	+				+0.0
3,531,447	+				+0.1
3,531,447	+				+0.4
3,531,447	+				+1.4
3,531,447	+				-0.1
3,531,450	-				-0.2
3,531,453	-				+0.3
3,531,453	-				+0.2
3,531,453	-				+0.7
3,531,455	-				-1.2
3,531,455	-				+0.5
3,531,455	-				+0.0
3,531,455	-				+0.3
3,531,455	-				+1.4
3,531,458	-				-0.1
3,531,469	+				-1.0
3,531,477	+				+1.4
3,531,479	-				+0.1
3,531,484	-				+1.4
3,531,502	-				-0.7
3,531,509	+				-0.1
3,531,515	+				+0.4
3,531,515	+				-0.9
3,531,516	-				+0.0
3,531,517	-				+2.1
3,531,517	-				-2.2
3,531,517	-				-0.9
3,531,521	+				+1.1
3,531,530	+				+0.3
3,531,530	+				+0.5
3,531,530	+				+0.4
3,531,538	-				-0.0
3,531,538	-				-0.1
3,531,540	+				+0.4
3,531,543	-				+0.6
3,531,545	+				-0.3
3,531,545	+				-1.5
3,531,553	-				+0.8
3,531,553	-				+0.1
3,531,553	-				+0.6
3,531,553	-				+1.5
3,531,553	-				+0.1
3,531,553	-				-0.6
3,531,553	-				-0.7
3,531,553	-				+0.1
3,531,553	-				+0.4
3,531,571	+				-0.3
3,531,580	+				-0.4
3,531,581	+				-1.4
3,531,582	+				-0.2
3,531,582	+				+0.3
3,531,582	+				-0.2
3,531,582	+				-0.5
3,531,583	+				-0.5
3,531,584	-				+0.0
3,531,590	-				-0.8
3,531,590	-				+0.1
3,531,590	-				+0.3
3,531,590	-				-0.3
3,531,594	+				+0.3
3,531,594	+				-0.2
3,531,599	+				-0.3
3,531,602	-				-0.7
3,531,602	-				-1.1
3,531,602	-				+0.5
3,531,609	+				-0.4
3,531,609	+				+0.2
3,531,609	+				-0.4
3,531,609	+				+1.4
3,531,609	+				-0.2
3,531,609	+				-0.1
3,531,609	+				+0.2
3,531,609	+				+0.9
3,531,609	+				-0.3
3,531,609	+				-0.6
3,531,612	-				-0.4
3,531,612	-				+0.1
3,531,612	-				+0.6
3,531,614	+				-0.3
3,531,617	-				-1.5
3,531,617	-				+0.1
3,531,617	-				+0.1
3,531,617	-				+0.1
3,531,617	-				-0.6
3,531,617	-				-0.6
3,531,617	-				+0.1
3,531,617	-				-0.5
3,531,647	+		Dshi_3358	0.13	+0.0
3,531,667	-		Dshi_3358	0.15	-0.0
3,531,685	+		Dshi_3358	0.17	+0.7
3,531,685	+		Dshi_3358	0.17	-0.0
3,531,697	+		Dshi_3358	0.19	-0.4
3,531,742	-		Dshi_3358	0.25	-0.8
3,531,752	+		Dshi_3358	0.26	-1.2
3,531,755	-		Dshi_3358	0.26	-0.3
3,531,763	+		Dshi_3358	0.27	-0.0
3,531,781	+		Dshi_3358	0.30	+0.1
3,531,787	+		Dshi_3358	0.30	+0.5
3,531,792	+		Dshi_3358	0.31	+0.0
3,531,792	+		Dshi_3358	0.31	-0.4
3,531,792	+		Dshi_3358	0.31	+1.0
3,531,792	+		Dshi_3358	0.31	-0.1
3,531,795	-		Dshi_3358	0.31	+1.4
3,531,795	-		Dshi_3358	0.31	-0.1
3,531,800	+		Dshi_3358	0.32	+0.3
3,531,800	+		Dshi_3358	0.32	+0.1
3,531,800	-		Dshi_3358	0.32	-0.5
3,531,802	+		Dshi_3358	0.32	+0.2
3,531,802	+		Dshi_3358	0.32	-0.6
3,531,802	+		Dshi_3358	0.32	+0.4
3,531,802	+		Dshi_3358	0.32	+0.8
3,531,802	+		Dshi_3358	0.32	+0.1
3,531,802	+		Dshi_3358	0.32	-0.9
3,531,802	+		Dshi_3358	0.32	-0.1
3,531,802	+		Dshi_3358	0.32	+0.7
3,531,808	-		Dshi_3358	0.33	+0.0
3,531,808	-		Dshi_3358	0.33	-0.1
3,531,808	-		Dshi_3358	0.33	-0.5
3,531,808	-		Dshi_3358	0.33	-0.6
3,531,808	-		Dshi_3358	0.33	+0.1
3,531,810	-		Dshi_3358	0.33	-0.3
3,531,810	-		Dshi_3358	0.33	+0.1
3,531,810	-		Dshi_3358	0.33	+1.7
3,531,810	-		Dshi_3358	0.33	-1.2
3,531,810	-		Dshi_3358	0.33	-0.5
3,531,810	-		Dshi_3358	0.33	-0.2
3,531,810	-		Dshi_3358	0.33	-0.7
3,531,810	-		Dshi_3358	0.33	-0.1
3,531,810	-		Dshi_3358	0.33	+0.9
3,531,810	-		Dshi_3358	0.33	+1.8
3,531,810	-		Dshi_3358	0.33	+0.4
3,531,810	-		Dshi_3358	0.33	+2.0
3,531,810	-		Dshi_3358	0.33	-0.1
3,531,810	-		Dshi_3358	0.33	-0.5
3,531,810	-		Dshi_3358	0.33	-0.2
3,531,818	+		Dshi_3358	0.34	-0.1
3,531,873	+		Dshi_3358	0.41	-0.5
3,531,874	+		Dshi_3358	0.41	+0.7
3,531,874	+		Dshi_3358	0.41	-0.0
3,531,874	+		Dshi_3358	0.41	+0.8
3,531,874	+		Dshi_3358	0.41	-0.3
3,531,874	+		Dshi_3358	0.41	-0.4
3,531,874	+		Dshi_3358	0.41	-0.7
3,531,879	+		Dshi_3358	0.42	-0.2
3,531,881	+		Dshi_3358	0.42	+0.9
3,531,882	-		Dshi_3358	0.42	+0.1
3,531,882	-		Dshi_3358	0.42	-0.2
3,531,882	-		Dshi_3358	0.42	-0.5
3,531,882	-		Dshi_3358	0.42	-0.2
3,531,882	-		Dshi_3358	0.42	+0.2
3,531,882	-		Dshi_3358	0.42	-0.0
3,531,882	-		Dshi_3358	0.42	-1.2
3,531,882	-		Dshi_3358	0.42	+0.5
3,531,882	-		Dshi_3358	0.42	-0.5
3,531,882	-		Dshi_3358	0.42	+2.1
3,531,882	-		Dshi_3358	0.42	-1.8
3,531,884	+		Dshi_3358	0.43	+1.1
3,531,884	+		Dshi_3358	0.43	-0.2
3,531,884	+		Dshi_3358	0.43	-1.1
3,531,884	+		Dshi_3358	0.43	-1.1
3,531,884	+		Dshi_3358	0.43	+0.2
3,531,884	+		Dshi_3358	0.43	-0.2
3,531,884	+		Dshi_3358	0.43	-1.6
3,531,884	+		Dshi_3358	0.43	+0.1
3,531,884	+		Dshi_3358	0.43	-0.1
3,531,887	-		Dshi_3358	0.43	+0.3
3,531,887	-		Dshi_3358	0.43	+0.4
3,531,892	-		Dshi_3358	0.44	+0.8
3,531,892	-		Dshi_3358	0.44	-0.9
3,531,892	-		Dshi_3358	0.44	-0.4
3,531,892	-		Dshi_3358	0.44	+0.4
3,531,894	-		Dshi_3358	0.44	-1.1
3,531,899	-		Dshi_3358	0.44	-0.1
3,531,908	+		Dshi_3358	0.46	+0.1
3,531,915	-		Dshi_3358	0.46	+0.1
3,531,965	-		Dshi_3358	0.53	-0.2
3,531,967	+		Dshi_3358	0.53	-0.1
3,531,967	+		Dshi_3358	0.53	-0.4
3,531,972	+		Dshi_3358	0.54	+0.7
3,531,972	+		Dshi_3358	0.54	-0.2
3,531,975	-		Dshi_3358	0.54	+0.7
3,531,975	-		Dshi_3358	0.54	+1.4
3,531,990	+		Dshi_3358	0.56	-0.6
3,531,991	+		Dshi_3358	0.56	+0.4
3,531,991	+		Dshi_3358	0.56	+0.3
3,531,991	+		Dshi_3358	0.56	-0.5
3,531,991	+		Dshi_3358	0.56	-0.7
3,531,991	+		Dshi_3358	0.56	+0.8
3,531,996	+		Dshi_3358	0.57	-1.4
3,531,998	-		Dshi_3358	0.57	-0.7
3,531,998	-		Dshi_3358	0.57	-0.1
3,531,998	-		Dshi_3358	0.57	-0.1
3,531,998	-		Dshi_3358	0.57	-0.9
3,531,998	-		Dshi_3358	0.57	+0.8
3,531,999	-		Dshi_3358	0.57	+1.1
3,531,999	-		Dshi_3358	0.57	-0.0
3,531,999	-		Dshi_3358	0.57	+0.4
3,532,002	+		Dshi_3358	0.57	-0.5
3,532,002	+		Dshi_3358	0.57	+0.2
3,532,004	-		Dshi_3358	0.58	-0.5
3,532,010	-		Dshi_3358	0.58	+0.1
3,532,010	-		Dshi_3358	0.58	+0.1
3,532,011	-		Dshi_3358	0.59	+0.3
3,532,021	-		Dshi_3358	0.60	+0.1
3,532,029	-		Dshi_3358	0.61	-0.8
3,532,033	-		Dshi_3358	0.61	+0.1
3,532,038	-		Dshi_3358	0.62	-0.2
3,532,069	-		Dshi_3358	0.66	+0.2
3,532,097	+		Dshi_3358	0.69	-1.0
3,532,111	+		Dshi_3358	0.71	+0.1
3,532,124	-		Dshi_3358	0.73	-0.7
3,532,169	+		Dshi_3358	0.79	+0.3
3,532,169	+		Dshi_3358	0.79	+1.6
3,532,169	+		Dshi_3358	0.79	-0.3
3,532,169	+		Dshi_3358	0.79	-0.0
3,532,169	+		Dshi_3358	0.79	-1.4
3,532,177	-		Dshi_3358	0.80	+0.1
3,532,177	-		Dshi_3358	0.80	+1.0
3,532,177	-		Dshi_3358	0.80	-0.2
3,532,177	-		Dshi_3358	0.80	-0.6
3,532,177	-		Dshi_3358	0.80	-0.1
3,532,177	-		Dshi_3358	0.80	+0.3
3,532,182	-		Dshi_3358	0.80	+0.8
3,532,187	+		Dshi_3358	0.81	+2.0
3,532,187	+		Dshi_3358	0.81	-0.6
3,532,187	+		Dshi_3358	0.81	-0.3
3,532,187	+		Dshi_3358	0.81	-0.3
3,532,187	-		Dshi_3358	0.81	+0.4
3,532,196	+		Dshi_3358	0.82	+0.2
3,532,213	+		Dshi_3358	0.84	-0.2
3,532,216	+		Dshi_3358	0.84	+1.2
3,532,221	-		Dshi_3358	0.85	-0.9
3,532,221	-		Dshi_3358	0.85	+0.2
3,532,221	-		Dshi_3358	0.85	+0.0
3,532,224	+		Dshi_3358	0.85	+0.1
3,532,224	+		Dshi_3358	0.85	-1.2
3,532,237	-		Dshi_3358	0.87	+0.3
3,532,242	-		Dshi_3358	0.88	-0.0
3,532,256	-		Dshi_3358	0.90	-0.3
3,532,261	+				-0.2
3,532,269	+				+0.0
3,532,291	+				+0.7
3,532,299	-				-0.0
3,532,300	-				+0.6
3,532,309	+				+1.4
3,532,313	-				-0.4
3,532,315	+				-0.7
3,532,315	+				+0.6
3,532,315	+				-0.0
3,532,315	+				-0.2
3,532,315	+				+0.1
3,532,315	-				+0.4
3,532,323	-				+0.8
3,532,323	-				+0.4
3,532,324	-				-2.3
3,532,334	+				+0.8
3,532,336	+				+0.9
3,532,336	+				-1.2
3,532,336	+				-0.9
3,532,342	-				+0.3
3,532,359	-				-0.4
3,532,372	-				+0.2
3,532,374	-				-1.3
3,532,384	-		Dshi_3359	0.11	-0.1
3,532,418	-		Dshi_3359	0.20	-1.0
3,532,439	-		Dshi_3359	0.25	-0.2
3,532,451	+		Dshi_3359	0.28	-0.5
3,532,458	+		Dshi_3359	0.30	-0.1
3,532,463	-		Dshi_3359	0.31	-1.0
3,532,487	+		Dshi_3359	0.37	-1.1
3,532,487	+		Dshi_3359	0.37	-1.1
3,532,495	-		Dshi_3359	0.39	+0.4
3,532,495	-		Dshi_3359	0.39	-0.8
3,532,495	-		Dshi_3359	0.39	+0.0
3,532,495	-		Dshi_3359	0.39	-0.1
3,532,495	-		Dshi_3359	0.39	-0.5
3,532,506	-		Dshi_3359	0.42	-0.8
3,532,506	-		Dshi_3359	0.42	-0.4
3,532,525	+		Dshi_3359	0.47	-3.0
3,532,549	+		Dshi_3359	0.52	-1.3
3,532,561	+		Dshi_3359	0.55	-0.6
3,532,562	+		Dshi_3359	0.56	-0.2
3,532,564	-		Dshi_3359	0.56	-2.2
3,532,564	-		Dshi_3359	0.56	-0.3
3,532,566	-		Dshi_3359	0.57	-0.8
3,532,567	+		Dshi_3359	0.57	+1.2
3,532,578	-		Dshi_3359	0.60	+0.4
3,532,592	+		Dshi_3359	0.63	-0.2
3,532,612	+		Dshi_3359	0.68	-0.6
3,532,616	+		Dshi_3359	0.69	-0.1
3,532,616	+		Dshi_3359	0.69	-0.2
3,532,618	+		Dshi_3359	0.70	-1.2
3,532,626	-		Dshi_3359	0.72	-1.5
3,532,626	-		Dshi_3359	0.72	-0.0
3,532,650	-		Dshi_3359	0.78	-0.4
3,532,689	+		Dshi_3359	0.87	-0.9
3,532,697	-		Dshi_3359	0.89	-1.3
3,532,706	+				+0.8
3,532,706	+				+0.1
3,532,706	+				+0.7
3,532,714	-				-0.0
3,532,719	+				-0.9
3,532,727	-				-0.8
3,532,732	-				-0.7
3,532,732	-				+0.0
3,532,732	-				-0.1
3,532,738	+				-1.2
3,532,738	+				-0.7
3,532,739	+				-0.4
3,532,741	+				-1.6
3,532,741	+				-0.1
3,532,743	+				-1.4
3,532,748	+				-1.4
3,532,751	-				+0.3
3,532,759	+				-0.7
3,532,797	+		Dshi_3360	0.16	-1.1
3,532,825	-		Dshi_3360	0.24	-1.2
3,532,825	-		Dshi_3360	0.24	-0.3
3,532,826	-		Dshi_3360	0.24	-0.3
3,532,826	-		Dshi_3360	0.24	-0.5
3,532,833	+		Dshi_3360	0.26	-1.2
3,532,835	+		Dshi_3360	0.27	-0.1
3,532,841	-		Dshi_3360	0.28	-1.3
3,532,841	-		Dshi_3360	0.28	-0.4
3,532,841	-		Dshi_3360	0.28	-0.6
3,532,841	-		Dshi_3360	0.28	+1.0
3,532,877	+		Dshi_3360	0.38	-0.6
3,532,895	+		Dshi_3360	0.43	+0.1
3,532,901	-		Dshi_3360	0.44	-0.1
3,532,914	+		Dshi_3360	0.48	-0.6
3,532,914	+		Dshi_3360	0.48	-0.6
3,532,914	+		Dshi_3360	0.48	+1.1
3,532,914	+		Dshi_3360	0.48	-2.2
3,532,915	-		Dshi_3360	0.48	-0.2
3,532,920	-		Dshi_3360	0.49	-0.8
3,532,920	-		Dshi_3360	0.49	-0.8
3,532,920	-		Dshi_3360	0.49	+0.1
3,532,922	-		Dshi_3360	0.50	-0.9
3,532,924	+		Dshi_3360	0.51	-0.8
3,532,924	+		Dshi_3360	0.51	+0.0
3,532,924	+		Dshi_3360	0.51	+0.1
3,532,940	+		Dshi_3360	0.55	-0.4
3,532,950	+		Dshi_3360	0.58	-0.6
3,533,015	-		Dshi_3360	0.75	-1.5
3,533,026	+		Dshi_3360	0.78	+0.8
3,533,026	+		Dshi_3360	0.78	+0.7
3,533,026	+		Dshi_3360	0.78	+0.6
3,533,026	+		Dshi_3360	0.78	+0.7
3,533,026	+		Dshi_3360	0.78	+0.2
3,533,026	+		Dshi_3360	0.78	+1.0
3,533,026	+		Dshi_3360	0.78	+0.4
3,533,026	+		Dshi_3360	0.78	-0.9
3,533,026	+		Dshi_3360	0.78	+0.7
3,533,026	+		Dshi_3360	0.78	+0.0
3,533,026	+		Dshi_3360	0.78	+0.7
3,533,026	+		Dshi_3360	0.78	-1.5
3,533,033	+		Dshi_3360	0.80	-0.3
3,533,034	-		Dshi_3360	0.80	+0.3
3,533,034	-		Dshi_3360	0.80	-1.4
3,533,034	-		Dshi_3360	0.80	-1.0
3,533,039	+		Dshi_3360	0.81	-1.4
3,533,047	-		Dshi_3360	0.84	-2.5
3,533,068	+		Dshi_3360	0.89	+1.0
3,533,100	-				-2.6
3,533,119	+				-0.0
3,533,133	+				-0.5
3,533,133	+				+1.7
3,533,148	+				+0.7
3,533,152	+				+1.4
3,533,166	-				-0.8
3,533,171	+				+0.6
3,533,171	+				-0.2
3,533,172	+				-0.4
3,533,179	-				-1.1
3,533,181	+				-0.9
3,533,181	+				-1.8
3,533,181	-				-0.6
3,533,199	-				-0.6
3,533,199	-				-2.8
3,533,199	-				-1.2
3,533,199	-				+0.2
3,533,213	-				-0.6
3,533,233	-				+0.1
3,533,236	-				-0.3
3,533,236	-				+0.3
3,533,253	+				-0.3
3,533,255	+				-1.1
3,533,255	+				+0.2
3,533,255	+				-0.4
3,533,263	-				-0.8
3,533,263	-				-0.8
3,533,299	-				-0.2
3,533,320	-				+1.4
3,533,358	+		Dshi_3361	0.12	-1.1
3,533,362	-		Dshi_3361	0.12	-2.3
3,533,365	+		Dshi_3361	0.13	+0.6
3,533,373	-		Dshi_3361	0.13	-0.2
3,533,375	+		Dshi_3361	0.13	-0.2
3,533,378	-		Dshi_3361	0.13	-0.5
3,533,415	+		Dshi_3361	0.16	+1.4
3,533,449	+		Dshi_3361	0.18	-0.7
3,533,449	+		Dshi_3361	0.18	-0.4
3,533,449	+		Dshi_3361	0.18	-0.8
3,533,449	+		Dshi_3361	0.18	-0.1
3,533,449	+		Dshi_3361	0.18	+0.0
3,533,449	+		Dshi_3361	0.18	-1.1
3,533,457	-		Dshi_3361	0.19	+2.0
3,533,457	-		Dshi_3361	0.19	-0.2
3,533,457	-		Dshi_3361	0.19	-1.1
3,533,457	-		Dshi_3361	0.19	+0.9
3,533,457	-		Dshi_3361	0.19	+0.0
3,533,457	-		Dshi_3361	0.19	-0.8
3,533,457	-		Dshi_3361	0.19	+0.0
3,533,457	-		Dshi_3361	0.19	-0.4
3,533,457	-		Dshi_3361	0.19	+1.1
3,533,457	-		Dshi_3361	0.19	+1.4
3,533,471	-		Dshi_3361	0.19	+0.6
3,533,481	-		Dshi_3361	0.20	-0.7
3,533,487	+		Dshi_3361	0.20	-0.2
3,533,492	+		Dshi_3361	0.21	-0.4
3,533,504	-		Dshi_3361	0.22	-0.1
3,533,558	+		Dshi_3361	0.25	+0.4
3,533,604	+		Dshi_3361	0.28	-1.0
3,533,610	+		Dshi_3361	0.28	-1.6
3,533,619	-		Dshi_3361	0.29	-1.4
3,533,637	+		Dshi_3361	0.30	-0.3
3,533,663	+		Dshi_3361	0.32	-3.3
3,533,676	-		Dshi_3361	0.33	-0.5
3,533,686	-		Dshi_3361	0.33	+1.2
3,533,692	-		Dshi_3361	0.34	-0.1