Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2941 and Dshi_2942 are separated by 90 nucleotides Dshi_2942 and Dshi_2943 are separated by 66 nucleotides Dshi_2943 and Dshi_2944 overlap by 4 nucleotides Dshi_2944 and Dshi_2945 overlap by 4 nucleotides
Dshi_2941: Dshi_2941 - hypothetical protein (RefSeq), at 3,100,657 to 3,101,940
_2941
Dshi_2942: Dshi_2942 - ChaC family protein (RefSeq), at 3,102,031 to 3,102,573
_2942
Dshi_2943: Dshi_2943 - hypothetical protein (RefSeq), at 3,102,640 to 3,103,638
_2943
Dshi_2944: Dshi_2944 - Extensin family protein (RefSeq), at 3,103,635 to 3,104,450
_2944
Dshi_2945: Dshi_2945 - Prephenate dehydrogenase (RefSeq), at 3,104,447 to 3,105,388
_2945
Position (kb)
3102
3103
3104 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3101.770 kb on + strand, within Dshi_2941 at 3101.942 kb on + strand at 3101.966 kb on - strand at 3102.029 kb on + strand at 3102.382 kb on + strand, within Dshi_2942 at 3102.445 kb on + strand, within Dshi_2942 at 3102.686 kb on - strand at 3102.815 kb on + strand, within Dshi_2943 at 3102.823 kb on - strand, within Dshi_2943 at 3103.169 kb on + strand, within Dshi_2943 at 3103.497 kb on - strand, within Dshi_2943 at 3103.632 kb on + strand at 3103.656 kb on - strand at 3103.733 kb on - strand, within Dshi_2944 at 3103.854 kb on + strand, within Dshi_2944 at 3103.857 kb on - strand, within Dshi_2944 at 3103.908 kb on + strand, within Dshi_2944 at 3104.089 kb on - strand, within Dshi_2944 at 3104.259 kb on + strand, within Dshi_2944 at 3104.262 kb on - strand, within Dshi_2944 at 3104.278 kb on - strand, within Dshi_2944 at 3104.507 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 3,101,770 + Dshi_2941 0.87 -2.1 3,101,942 + -0.9 3,101,966 - -0.1 3,102,029 + +0.2 3,102,382 + Dshi_2942 0.65 -0.3 3,102,445 + Dshi_2942 0.76 -0.4 3,102,686 - +0.7 3,102,815 + Dshi_2943 0.18 -0.2 3,102,823 - Dshi_2943 0.18 -1.1 3,103,169 + Dshi_2943 0.53 -0.2 3,103,497 - Dshi_2943 0.86 +1.4 3,103,632 + +0.0 3,103,656 - -0.5 3,103,733 - Dshi_2944 0.12 -0.9 3,103,854 + Dshi_2944 0.27 -0.1 3,103,857 - Dshi_2944 0.27 -0.4 3,103,908 + Dshi_2944 0.33 -0.7 3,104,089 - Dshi_2944 0.56 +0.2 3,104,259 + Dshi_2944 0.76 -0.3 3,104,262 - Dshi_2944 0.77 +0.5 3,104,278 - Dshi_2944 0.79 +0.4 3,104,507 + +1.9
Or see this region's nucleotide sequence