Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2897

Experiment: m.b. Cephalothin 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2896 and Dshi_2897 are separated by 155 nucleotidesDshi_2897 and Dshi_2898 are separated by 48 nucleotides Dshi_2896: Dshi_2896 - FAD linked oxidase domain protein (RefSeq), at 3,051,689 to 3,053,131 _2896 Dshi_2897: Dshi_2897 - hypothetical protein (RefSeq), at 3,053,287 to 3,053,973 _2897 Dshi_2898: Dshi_2898 - PUCC protein (RefSeq), at 3,054,022 to 3,055,425 _2898 Position (kb) 3053 3054Strain fitness (log2 ratio) -2 -1 0 1at 3052.337 kb on - strand, within Dshi_2896at 3052.536 kb on - strand, within Dshi_2896at 3052.617 kb on - strand, within Dshi_2896at 3052.693 kb on - strand, within Dshi_2896at 3052.693 kb on - strand, within Dshi_2896at 3052.887 kb on - strand, within Dshi_2896at 3052.907 kb on + strand, within Dshi_2896at 3052.993 kb on - strandat 3053.059 kb on - strandat 3053.077 kb on + strandat 3053.216 kb on - strandat 3053.265 kb on + strandat 3053.445 kb on - strand, within Dshi_2897at 3053.532 kb on - strand, within Dshi_2897at 3053.791 kb on - strand, within Dshi_2897at 3053.994 kb on - strandat 3054.028 kb on - strandat 3054.064 kb on - strandat 3054.088 kb on - strandat 3054.122 kb on - strandat 3054.258 kb on + strand, within Dshi_2898at 3054.267 kb on - strand, within Dshi_2898at 3054.309 kb on + strand, within Dshi_2898at 3054.309 kb on + strand, within Dshi_2898at 3054.421 kb on - strand, within Dshi_2898at 3054.649 kb on - strand, within Dshi_2898at 3054.652 kb on + strand, within Dshi_2898at 3054.660 kb on - strand, within Dshi_2898at 3054.758 kb on - strand, within Dshi_2898at 3054.824 kb on + strand, within Dshi_2898at 3054.824 kb on + strand, within Dshi_2898at 3054.832 kb on - strand, within Dshi_2898at 3054.837 kb on - strand, within Dshi_2898at 3054.837 kb on - strand, within Dshi_2898at 3054.839 kb on + strand, within Dshi_2898at 3054.879 kb on - strand, within Dshi_2898

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml
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3,052,337 - Dshi_2896 0.45 +0.6
3,052,536 - Dshi_2896 0.59 -0.5
3,052,617 - Dshi_2896 0.64 +0.5
3,052,693 - Dshi_2896 0.70 +0.5
3,052,693 - Dshi_2896 0.70 +0.5
3,052,887 - Dshi_2896 0.83 -1.9
3,052,907 + Dshi_2896 0.84 +0.5
3,052,993 - +0.2
3,053,059 - -1.1
3,053,077 + +0.4
3,053,216 - -0.8
3,053,265 + +1.1
3,053,445 - Dshi_2897 0.23 -1.1
3,053,532 - Dshi_2897 0.36 +0.2
3,053,791 - Dshi_2897 0.73 -0.8
3,053,994 - +1.2
3,054,028 - +0.2
3,054,064 - -0.4
3,054,088 - +0.2
3,054,122 - +0.0
3,054,258 + Dshi_2898 0.17 +0.9
3,054,267 - Dshi_2898 0.17 +0.0
3,054,309 + Dshi_2898 0.20 -0.2
3,054,309 + Dshi_2898 0.20 +0.2
3,054,421 - Dshi_2898 0.28 -0.9
3,054,649 - Dshi_2898 0.45 +0.2
3,054,652 + Dshi_2898 0.45 +0.5
3,054,660 - Dshi_2898 0.45 +0.1
3,054,758 - Dshi_2898 0.52 -1.8
3,054,824 + Dshi_2898 0.57 -2.1
3,054,824 + Dshi_2898 0.57 +1.4
3,054,832 - Dshi_2898 0.58 +0.3
3,054,837 - Dshi_2898 0.58 +0.5
3,054,837 - Dshi_2898 0.58 -0.6
3,054,839 + Dshi_2898 0.58 -2.0
3,054,879 - Dshi_2898 0.61 -0.5

Or see this region's nucleotide sequence