Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2896 and Dshi_2897 are separated by 155 nucleotides Dshi_2897 and Dshi_2898 are separated by 48 nucleotides
Dshi_2896: Dshi_2896 - FAD linked oxidase domain protein (RefSeq), at 3,051,689 to 3,053,131
_2896
Dshi_2897: Dshi_2897 - hypothetical protein (RefSeq), at 3,053,287 to 3,053,973
_2897
Dshi_2898: Dshi_2898 - PUCC protein (RefSeq), at 3,054,022 to 3,055,425
_2898
Position (kb)
3053
3054 Strain fitness (log2 ratio)
-2
-1
0
1 at 3052.337 kb on - strand, within Dshi_2896 at 3052.536 kb on - strand, within Dshi_2896 at 3052.617 kb on - strand, within Dshi_2896 at 3052.693 kb on - strand, within Dshi_2896 at 3052.693 kb on - strand, within Dshi_2896 at 3052.887 kb on - strand, within Dshi_2896 at 3052.907 kb on + strand, within Dshi_2896 at 3052.993 kb on - strand at 3053.059 kb on - strand at 3053.077 kb on + strand at 3053.216 kb on - strand at 3053.265 kb on + strand at 3053.445 kb on - strand, within Dshi_2897 at 3053.532 kb on - strand, within Dshi_2897 at 3053.791 kb on - strand, within Dshi_2897 at 3053.994 kb on - strand at 3054.028 kb on - strand at 3054.064 kb on - strand at 3054.088 kb on - strand at 3054.122 kb on - strand at 3054.258 kb on + strand, within Dshi_2898 at 3054.267 kb on - strand, within Dshi_2898 at 3054.309 kb on + strand, within Dshi_2898 at 3054.309 kb on + strand, within Dshi_2898 at 3054.421 kb on - strand, within Dshi_2898 at 3054.649 kb on - strand, within Dshi_2898 at 3054.652 kb on + strand, within Dshi_2898 at 3054.660 kb on - strand, within Dshi_2898 at 3054.758 kb on - strand, within Dshi_2898 at 3054.824 kb on + strand, within Dshi_2898 at 3054.824 kb on + strand, within Dshi_2898 at 3054.832 kb on - strand, within Dshi_2898 at 3054.837 kb on - strand, within Dshi_2898 at 3054.837 kb on - strand, within Dshi_2898 at 3054.839 kb on + strand, within Dshi_2898 at 3054.879 kb on - strand, within Dshi_2898
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 3,052,337 - Dshi_2896 0.45 +0.6 3,052,536 - Dshi_2896 0.59 -0.5 3,052,617 - Dshi_2896 0.64 +0.5 3,052,693 - Dshi_2896 0.70 +0.5 3,052,693 - Dshi_2896 0.70 +0.5 3,052,887 - Dshi_2896 0.83 -1.9 3,052,907 + Dshi_2896 0.84 +0.5 3,052,993 - +0.2 3,053,059 - -1.1 3,053,077 + +0.4 3,053,216 - -0.8 3,053,265 + +1.1 3,053,445 - Dshi_2897 0.23 -1.1 3,053,532 - Dshi_2897 0.36 +0.2 3,053,791 - Dshi_2897 0.73 -0.8 3,053,994 - +1.2 3,054,028 - +0.2 3,054,064 - -0.4 3,054,088 - +0.2 3,054,122 - +0.0 3,054,258 + Dshi_2898 0.17 +0.9 3,054,267 - Dshi_2898 0.17 +0.0 3,054,309 + Dshi_2898 0.20 -0.2 3,054,309 + Dshi_2898 0.20 +0.2 3,054,421 - Dshi_2898 0.28 -0.9 3,054,649 - Dshi_2898 0.45 +0.2 3,054,652 + Dshi_2898 0.45 +0.5 3,054,660 - Dshi_2898 0.45 +0.1 3,054,758 - Dshi_2898 0.52 -1.8 3,054,824 + Dshi_2898 0.57 -2.1 3,054,824 + Dshi_2898 0.57 +1.4 3,054,832 - Dshi_2898 0.58 +0.3 3,054,837 - Dshi_2898 0.58 +0.5 3,054,837 - Dshi_2898 0.58 -0.6 3,054,839 + Dshi_2898 0.58 -2.0 3,054,879 - Dshi_2898 0.61 -0.5
Or see this region's nucleotide sequence