Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2846 and Dshi_2847 are separated by 57 nucleotides Dshi_2847 and Dshi_2848 overlap by 4 nucleotides Dshi_2848 and Dshi_2849 are separated by 130 nucleotides Dshi_2849 and Dshi_2850 overlap by 4 nucleotides
Dshi_2846: Dshi_2846 - inner-membrane translocator (RefSeq), at 3,003,577 to 3,004,542
_2846
Dshi_2847: Dshi_2847 - protein of unknown function DUF81 (RefSeq), at 3,004,600 to 3,005,520
_2847
Dshi_2848: Dshi_2848 - hypothetical protein (RefSeq), at 3,005,517 to 3,006,275
_2848
Dshi_2849: Dshi_2849 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,006,406 to 3,007,137
_2849
Dshi_2850: Dshi_2850 - AAA ATPase (RefSeq), at 3,007,134 to 3,008,669
_2850
Position (kb)
3005
3006
3007 Strain fitness (log2 ratio)
-2
-1
0
1 at 3004.575 kb on - strand at 3004.614 kb on + strand at 3004.622 kb on - strand at 3005.295 kb on - strand, within Dshi_2847 at 3005.382 kb on + strand, within Dshi_2847 at 3005.802 kb on + strand, within Dshi_2848 at 3006.045 kb on - strand, within Dshi_2848 at 3006.062 kb on - strand, within Dshi_2848 at 3006.140 kb on + strand, within Dshi_2848 at 3006.172 kb on + strand, within Dshi_2848 at 3006.333 kb on + strand at 3006.402 kb on + strand at 3006.472 kb on - strand at 3006.621 kb on + strand, within Dshi_2849 at 3006.675 kb on - strand, within Dshi_2849 at 3006.890 kb on + strand, within Dshi_2849 at 3007.024 kb on - strand, within Dshi_2849 at 3007.218 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 3,004,575 - -0.9 3,004,614 + -2.0 3,004,622 - -0.2 3,005,295 - Dshi_2847 0.75 -0.1 3,005,382 + Dshi_2847 0.85 -0.6 3,005,802 + Dshi_2848 0.38 -1.1 3,006,045 - Dshi_2848 0.70 -0.1 3,006,062 - Dshi_2848 0.72 -0.9 3,006,140 + Dshi_2848 0.82 -1.7 3,006,172 + Dshi_2848 0.86 -0.8 3,006,333 + -0.1 3,006,402 + -1.8 3,006,472 - +0.0 3,006,621 + Dshi_2849 0.29 +0.2 3,006,675 - Dshi_2849 0.37 +0.2 3,006,890 + Dshi_2849 0.66 +0.4 3,007,024 - Dshi_2849 0.84 +0.2 3,007,218 + +0.4
Or see this region's nucleotide sequence