Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2848

Experiment: m.b. Cephalothin 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_2846 and Dshi_2847 are separated by 57 nucleotidesDshi_2847 and Dshi_2848 overlap by 4 nucleotidesDshi_2848 and Dshi_2849 are separated by 130 nucleotidesDshi_2849 and Dshi_2850 overlap by 4 nucleotides Dshi_2846: Dshi_2846 - inner-membrane translocator (RefSeq), at 3,003,577 to 3,004,542 _2846 Dshi_2847: Dshi_2847 - protein of unknown function DUF81 (RefSeq), at 3,004,600 to 3,005,520 _2847 Dshi_2848: Dshi_2848 - hypothetical protein (RefSeq), at 3,005,517 to 3,006,275 _2848 Dshi_2849: Dshi_2849 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,006,406 to 3,007,137 _2849 Dshi_2850: Dshi_2850 - AAA ATPase (RefSeq), at 3,007,134 to 3,008,669 _2850 Position (kb) 3005 3006 3007Strain fitness (log2 ratio) -2 -1 0 1at 3004.575 kb on - strandat 3004.614 kb on + strandat 3004.622 kb on - strandat 3005.295 kb on - strand, within Dshi_2847at 3005.382 kb on + strand, within Dshi_2847at 3005.802 kb on + strand, within Dshi_2848at 3006.045 kb on - strand, within Dshi_2848at 3006.062 kb on - strand, within Dshi_2848at 3006.140 kb on + strand, within Dshi_2848at 3006.172 kb on + strand, within Dshi_2848at 3006.333 kb on + strandat 3006.402 kb on + strandat 3006.472 kb on - strandat 3006.621 kb on + strand, within Dshi_2849at 3006.675 kb on - strand, within Dshi_2849at 3006.890 kb on + strand, within Dshi_2849at 3007.024 kb on - strand, within Dshi_2849at 3007.218 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml
remove
3,004,575 - -0.9
3,004,614 + -2.0
3,004,622 - -0.2
3,005,295 - Dshi_2847 0.75 -0.1
3,005,382 + Dshi_2847 0.85 -0.6
3,005,802 + Dshi_2848 0.38 -1.1
3,006,045 - Dshi_2848 0.70 -0.1
3,006,062 - Dshi_2848 0.72 -0.9
3,006,140 + Dshi_2848 0.82 -1.7
3,006,172 + Dshi_2848 0.86 -0.8
3,006,333 + -0.1
3,006,402 + -1.8
3,006,472 - +0.0
3,006,621 + Dshi_2849 0.29 +0.2
3,006,675 - Dshi_2849 0.37 +0.2
3,006,890 + Dshi_2849 0.66 +0.4
3,007,024 - Dshi_2849 0.84 +0.2
3,007,218 + +0.4

Or see this region's nucleotide sequence