Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2773 and Dshi_2774 overlap by 4 nucleotides Dshi_2774 and Dshi_2775 are separated by 58 nucleotides Dshi_2775 and Dshi_2776 are separated by 352 nucleotides
Dshi_2773: Dshi_2773 - amidohydrolase (RefSeq), at 2,935,167 to 2,936,507
_2773
Dshi_2774: Dshi_2774 - histidinol-phosphate phosphatase, putative (RefSeq), at 2,936,504 to 2,937,325
_2774
Dshi_2775: Dshi_2775 - transcriptional regulator, XRE family (RefSeq), at 2,937,384 to 2,937,755
_2775
Dshi_2776: Dshi_2776 - Alcohol dehydrogenase zinc-binding domain protein (RefSeq), at 2,938,108 to 2,939,067
_2776
Position (kb)
2937
2938 Strain fitness (log2 ratio)
-2
-1
0
1 at 2936.387 kb on + strand at 2936.390 kb on - strand at 2936.477 kb on - strand at 2937.328 kb on + strand at 2937.381 kb on + strand at 2937.538 kb on - strand, within Dshi_2775 at 2937.572 kb on + strand, within Dshi_2775 at 2937.572 kb on + strand, within Dshi_2775 at 2937.582 kb on - strand, within Dshi_2775 at 2937.628 kb on + strand, within Dshi_2775 at 2937.688 kb on + strand, within Dshi_2775 at 2937.731 kb on - strand at 2937.807 kb on + strand at 2937.898 kb on - strand at 2938.079 kb on - strand at 2938.148 kb on + strand at 2938.186 kb on + strand at 2938.191 kb on - strand at 2938.247 kb on - strand, within Dshi_2776 at 2938.254 kb on - strand, within Dshi_2776 at 2938.280 kb on + strand, within Dshi_2776 at 2938.312 kb on - strand, within Dshi_2776 at 2938.687 kb on - strand, within Dshi_2776 at 2938.687 kb on - strand, within Dshi_2776 at 2938.689 kb on + strand, within Dshi_2776 at 2938.698 kb on - strand, within Dshi_2776
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 2,936,387 + -1.2 2,936,390 - +0.3 2,936,477 - -0.0 2,937,328 + +1.4 2,937,381 + +0.0 2,937,538 - Dshi_2775 0.41 -0.6 2,937,572 + Dshi_2775 0.51 -0.9 2,937,572 + Dshi_2775 0.51 -1.8 2,937,582 - Dshi_2775 0.53 +0.1 2,937,628 + Dshi_2775 0.66 -1.1 2,937,688 + Dshi_2775 0.82 +0.2 2,937,731 - +0.2 2,937,807 + -0.9 2,937,898 - +0.2 2,938,079 - -1.3 2,938,148 + -0.4 2,938,186 + +0.2 2,938,191 - +0.7 2,938,247 - Dshi_2776 0.14 -2.1 2,938,254 - Dshi_2776 0.15 -0.4 2,938,280 + Dshi_2776 0.18 -0.5 2,938,312 - Dshi_2776 0.21 +0.6 2,938,687 - Dshi_2776 0.60 -0.4 2,938,687 - Dshi_2776 0.60 -0.4 2,938,689 + Dshi_2776 0.61 -0.3 2,938,698 - Dshi_2776 0.61 +0.5
Or see this region's nucleotide sequence