Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2741

Experiment: m.b. Cephalothin 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2740 and Dshi_2741 are separated by 42 nucleotidesDshi_2741 and Dshi_2742 are separated by 24 nucleotides Dshi_2740: Dshi_2740 - putative CheA signal transduction histidine kinase (RefSeq), at 2,901,566 to 2,903,512 _2740 Dshi_2741: Dshi_2741 - hypothetical protein (RefSeq), at 2,903,555 to 2,903,791 _2741 Dshi_2742: Dshi_2742 - Adenylosuccinate synthase (RefSeq), at 2,903,816 to 2,905,111 _2742 Position (kb) 2903 2904Strain fitness (log2 ratio) -2 -1 0 1at 2902.563 kb on - strand, within Dshi_2740at 2902.645 kb on - strand, within Dshi_2740at 2902.658 kb on - strand, within Dshi_2740at 2902.668 kb on - strand, within Dshi_2740at 2902.795 kb on + strand, within Dshi_2740at 2902.963 kb on + strand, within Dshi_2740at 2903.317 kb on - strand, within Dshi_2740at 2903.319 kb on - strandat 2903.403 kb on + strandat 2903.460 kb on + strandat 2903.514 kb on - strandat 2903.592 kb on + strand, within Dshi_2741at 2903.592 kb on + strand, within Dshi_2741at 2903.592 kb on + strand, within Dshi_2741at 2903.600 kb on - strand, within Dshi_2741at 2903.752 kb on + strand, within Dshi_2741

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml
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2,902,563 - Dshi_2740 0.51 -0.7
2,902,645 - Dshi_2740 0.55 -1.7
2,902,658 - Dshi_2740 0.56 -2.1
2,902,668 - Dshi_2740 0.57 -1.3
2,902,795 + Dshi_2740 0.63 -0.9
2,902,963 + Dshi_2740 0.72 -1.3
2,903,317 - Dshi_2740 0.90 -1.0
2,903,319 - -1.0
2,903,403 + -2.3
2,903,460 + -1.4
2,903,514 - -0.9
2,903,592 + Dshi_2741 0.16 +0.0
2,903,592 + Dshi_2741 0.16 -0.2
2,903,592 + Dshi_2741 0.16 +1.1
2,903,600 - Dshi_2741 0.19 -0.3
2,903,752 + Dshi_2741 0.83 +0.0

Or see this region's nucleotide sequence