Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2608 and Dshi_2609 are separated by 52 nucleotides Dshi_2609 and Dshi_2610 are separated by 193 nucleotides
Dshi_2608: Dshi_2608 - oxidoreductase domain protein (RefSeq), at 2,771,502 to 2,772,488
_2608
Dshi_2609: Dshi_2609 - RNA polymerase, sigma 32 subunit, RpoH (RefSeq), at 2,772,541 to 2,773,437
_2609
Dshi_2610: Dshi_2610 - pseudouridine synthase, RluA family (RefSeq), at 2,773,631 to 2,774,674
_2610
Position (kb)
2772
2773
2774 Strain fitness (log2 ratio)
-2
-1
0
1 at 2771.685 kb on - strand, within Dshi_2608 at 2771.691 kb on - strand, within Dshi_2608 at 2771.808 kb on - strand, within Dshi_2608 at 2771.878 kb on - strand, within Dshi_2608 at 2772.084 kb on - strand, within Dshi_2608 at 2772.132 kb on - strand, within Dshi_2608 at 2772.251 kb on - strand, within Dshi_2608 at 2772.354 kb on - strand, within Dshi_2608 at 2772.509 kb on + strand at 2772.574 kb on - strand at 2772.666 kb on + strand, within Dshi_2609 at 2772.793 kb on + strand, within Dshi_2609 at 2772.827 kb on - strand, within Dshi_2609 at 2772.837 kb on + strand, within Dshi_2609 at 2772.882 kb on + strand, within Dshi_2609 at 2772.890 kb on - strand, within Dshi_2609 at 2772.901 kb on - strand, within Dshi_2609 at 2773.009 kb on - strand, within Dshi_2609 at 2773.047 kb on - strand, within Dshi_2609 at 2773.274 kb on - strand, within Dshi_2609 at 2773.321 kb on - strand, within Dshi_2609 at 2773.398 kb on + strand at 2773.472 kb on + strand at 2773.523 kb on - strand at 2773.539 kb on + strand at 2773.539 kb on + strand at 2773.591 kb on + strand at 2773.655 kb on - strand at 2773.683 kb on + strand at 2773.979 kb on + strand, within Dshi_2610 at 2774.217 kb on + strand, within Dshi_2610 at 2774.342 kb on + strand, within Dshi_2610
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 2,771,685 - Dshi_2608 0.19 +0.2 2,771,691 - Dshi_2608 0.19 -0.1 2,771,808 - Dshi_2608 0.31 +0.5 2,771,878 - Dshi_2608 0.38 -0.5 2,772,084 - Dshi_2608 0.59 +0.0 2,772,132 - Dshi_2608 0.64 +0.3 2,772,251 - Dshi_2608 0.76 -0.1 2,772,354 - Dshi_2608 0.86 +0.3 2,772,509 + +0.0 2,772,574 - -0.9 2,772,666 + Dshi_2609 0.14 -1.0 2,772,793 + Dshi_2609 0.28 -1.4 2,772,827 - Dshi_2609 0.32 -1.7 2,772,837 + Dshi_2609 0.33 -1.5 2,772,882 + Dshi_2609 0.38 -1.5 2,772,890 - Dshi_2609 0.39 -1.3 2,772,901 - Dshi_2609 0.40 -1.3 2,773,009 - Dshi_2609 0.52 +0.4 2,773,047 - Dshi_2609 0.56 -0.5 2,773,274 - Dshi_2609 0.82 -1.2 2,773,321 - Dshi_2609 0.87 -0.4 2,773,398 + -0.9 2,773,472 + -1.2 2,773,523 - -0.8 2,773,539 + -0.0 2,773,539 + -0.2 2,773,591 + -0.1 2,773,655 - -0.1 2,773,683 + -1.3 2,773,979 + Dshi_2610 0.33 -2.2 2,774,217 + Dshi_2610 0.56 -0.5 2,774,342 + Dshi_2610 0.68 -0.9
Or see this region's nucleotide sequence