Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2370 and Dshi_2371 are separated by 237 nucleotides Dshi_2371 and Dshi_2372 are separated by 139 nucleotides
Dshi_2370: Dshi_2370 - Urease accessory protein UreD (RefSeq), at 2,502,483 to 2,503,328
_2370
Dshi_2371: Dshi_2371 - dihydroorotase, homodimeric type (RefSeq), at 2,503,566 to 2,504,603
_2371
Dshi_2372: Dshi_2372 - orotate phosphoribosyltransferase (RefSeq), at 2,504,743 to 2,505,423
_2372
Position (kb)
2503
2504
2505 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2502.591 kb on - strand, within Dshi_2370 at 2502.606 kb on + strand, within Dshi_2370 at 2502.629 kb on - strand, within Dshi_2370 at 2502.828 kb on + strand, within Dshi_2370 at 2502.897 kb on + strand, within Dshi_2370 at 2502.915 kb on - strand, within Dshi_2370 at 2502.958 kb on + strand, within Dshi_2370 at 2502.973 kb on + strand, within Dshi_2370 at 2502.979 kb on - strand, within Dshi_2370 at 2502.981 kb on - strand, within Dshi_2370 at 2503.018 kb on - strand, within Dshi_2370 at 2503.078 kb on + strand, within Dshi_2370 at 2503.079 kb on + strand, within Dshi_2370 at 2503.079 kb on + strand, within Dshi_2370 at 2503.177 kb on + strand, within Dshi_2370 at 2503.180 kb on - strand, within Dshi_2370 at 2503.201 kb on + strand, within Dshi_2370 at 2503.222 kb on - strand, within Dshi_2370 at 2503.222 kb on - strand, within Dshi_2370 at 2503.304 kb on + strand at 2503.318 kb on - strand at 2503.348 kb on + strand at 2503.351 kb on - strand at 2503.356 kb on - strand at 2503.625 kb on + strand at 2503.631 kb on - strand at 2503.694 kb on - strand, within Dshi_2371 at 2503.700 kb on + strand, within Dshi_2371 at 2503.716 kb on + strand, within Dshi_2371 at 2503.759 kb on - strand, within Dshi_2371 at 2503.795 kb on - strand, within Dshi_2371 at 2503.859 kb on + strand, within Dshi_2371 at 2503.955 kb on + strand, within Dshi_2371 at 2504.039 kb on - strand, within Dshi_2371 at 2504.056 kb on + strand, within Dshi_2371 at 2504.114 kb on + strand, within Dshi_2371 at 2504.143 kb on + strand, within Dshi_2371 at 2504.213 kb on - strand, within Dshi_2371 at 2504.225 kb on + strand, within Dshi_2371 at 2504.432 kb on - strand, within Dshi_2371 at 2504.509 kb on + strand at 2504.524 kb on - strand at 2504.559 kb on - strand at 2504.693 kb on - strand at 2504.714 kb on - strand at 2504.789 kb on + strand at 2504.797 kb on - strand at 2504.857 kb on + strand, within Dshi_2372 at 2504.870 kb on - strand, within Dshi_2372 at 2504.893 kb on - strand, within Dshi_2372 at 2505.096 kb on + strand, within Dshi_2372 at 2505.104 kb on - strand, within Dshi_2372 at 2505.142 kb on + strand, within Dshi_2372 at 2505.294 kb on + strand, within Dshi_2372 at 2505.302 kb on - strand, within Dshi_2372 at 2505.302 kb on - strand, within Dshi_2372
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 2,502,591 - Dshi_2370 0.13 -0.4 2,502,606 + Dshi_2370 0.15 +0.5 2,502,629 - Dshi_2370 0.17 -0.3 2,502,828 + Dshi_2370 0.41 -0.7 2,502,897 + Dshi_2370 0.49 -1.2 2,502,915 - Dshi_2370 0.51 -0.2 2,502,958 + Dshi_2370 0.56 +0.2 2,502,973 + Dshi_2370 0.58 -0.4 2,502,979 - Dshi_2370 0.59 +0.2 2,502,981 - Dshi_2370 0.59 -0.0 2,503,018 - Dshi_2370 0.63 -0.4 2,503,078 + Dshi_2370 0.70 +0.4 2,503,079 + Dshi_2370 0.70 -0.3 2,503,079 + Dshi_2370 0.70 -0.1 2,503,177 + Dshi_2370 0.82 -0.0 2,503,180 - Dshi_2370 0.82 +0.5 2,503,201 + Dshi_2370 0.85 -1.1 2,503,222 - Dshi_2370 0.87 +0.6 2,503,222 - Dshi_2370 0.87 -0.1 2,503,304 + +0.5 2,503,318 - -0.1 2,503,348 + -0.2 2,503,351 - -0.2 2,503,356 - +0.5 2,503,625 + -1.4 2,503,631 - -1.6 2,503,694 - Dshi_2371 0.12 -1.8 2,503,700 + Dshi_2371 0.13 -2.2 2,503,716 + Dshi_2371 0.14 -1.4 2,503,759 - Dshi_2371 0.19 -0.4 2,503,795 - Dshi_2371 0.22 -2.8 2,503,859 + Dshi_2371 0.28 -2.4 2,503,955 + Dshi_2371 0.37 +0.2 2,504,039 - Dshi_2371 0.46 -2.1 2,504,056 + Dshi_2371 0.47 -1.1 2,504,114 + Dshi_2371 0.53 -3.4 2,504,143 + Dshi_2371 0.56 -3.8 2,504,213 - Dshi_2371 0.62 -0.6 2,504,225 + Dshi_2371 0.63 -1.1 2,504,432 - Dshi_2371 0.83 -1.5 2,504,509 + -2.3 2,504,524 - -3.0 2,504,559 - -1.1 2,504,693 - -1.7 2,504,714 - -0.4 2,504,789 + -0.4 2,504,797 - +0.3 2,504,857 + Dshi_2372 0.17 -0.0 2,504,870 - Dshi_2372 0.19 +0.5 2,504,893 - Dshi_2372 0.22 -0.1 2,505,096 + Dshi_2372 0.52 -0.1 2,505,104 - Dshi_2372 0.53 +0.4 2,505,142 + Dshi_2372 0.59 +0.4 2,505,294 + Dshi_2372 0.81 -1.6 2,505,302 - Dshi_2372 0.82 -0.4 2,505,302 - Dshi_2372 0.82 -0.8
Or see this region's nucleotide sequence