Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2150

Experiment: m.b. Cephalothin 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2148 and Dshi_2149 are separated by 7 nucleotidesDshi_2149 and Dshi_2150 are separated by 18 nucleotidesDshi_2150 and Dshi_2151 are separated by 51 nucleotides Dshi_2148: Dshi_2148 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,277,653 to 2,278,543 _2148 Dshi_2149: Dshi_2149 - protein of unknown function DUF985 (RefSeq), at 2,278,551 to 2,278,991 _2149 Dshi_2150: Dshi_2150 - protein of unknown function UPF0075 (RefSeq), at 2,279,010 to 2,280,089 _2150 Dshi_2151: Dshi_2151 - tyrosyl-tRNA synthetase (RefSeq), at 2,280,141 to 2,281,394 _2151 Position (kb) 2279 2280 2281Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2278.084 kb on + strand, within Dshi_2148at 2278.118 kb on + strand, within Dshi_2148at 2278.125 kb on + strand, within Dshi_2148at 2278.143 kb on - strand, within Dshi_2148at 2278.217 kb on + strand, within Dshi_2148at 2278.275 kb on - strand, within Dshi_2148at 2278.281 kb on + strand, within Dshi_2148at 2278.294 kb on - strand, within Dshi_2148at 2278.345 kb on - strand, within Dshi_2148at 2278.381 kb on - strand, within Dshi_2148at 2278.403 kb on + strand, within Dshi_2148at 2278.477 kb on - strandat 2278.539 kb on + strandat 2278.673 kb on - strand, within Dshi_2149at 2278.714 kb on - strand, within Dshi_2149at 2278.727 kb on + strand, within Dshi_2149at 2278.752 kb on + strand, within Dshi_2149at 2278.752 kb on + strand, within Dshi_2149at 2278.788 kb on - strand, within Dshi_2149at 2278.794 kb on - strand, within Dshi_2149at 2278.893 kb on + strand, within Dshi_2149at 2278.896 kb on + strand, within Dshi_2149at 2278.945 kb on + strand, within Dshi_2149at 2278.994 kb on - strandat 2279.011 kb on - strandat 2279.065 kb on - strandat 2279.154 kb on - strandat 2279.431 kb on + strand, within Dshi_2150at 2279.466 kb on + strand, within Dshi_2150at 2279.468 kb on + strand, within Dshi_2150at 2279.519 kb on - strand, within Dshi_2150at 2279.547 kb on - strand, within Dshi_2150at 2279.713 kb on - strand, within Dshi_2150at 2279.713 kb on - strand, within Dshi_2150at 2279.733 kb on + strand, within Dshi_2150at 2279.746 kb on - strand, within Dshi_2150at 2279.746 kb on - strand, within Dshi_2150at 2279.774 kb on + strand, within Dshi_2150at 2279.806 kb on - strand, within Dshi_2150at 2279.930 kb on - strand, within Dshi_2150at 2279.941 kb on + strand, within Dshi_2150at 2279.967 kb on - strand, within Dshi_2150at 2280.020 kb on + strandat 2280.054 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml
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2,278,084 + Dshi_2148 0.48 +0.1
2,278,118 + Dshi_2148 0.52 +1.5
2,278,125 + Dshi_2148 0.53 +0.8
2,278,143 - Dshi_2148 0.55 -0.1
2,278,217 + Dshi_2148 0.63 -0.2
2,278,275 - Dshi_2148 0.70 +1.1
2,278,281 + Dshi_2148 0.70 -1.7
2,278,294 - Dshi_2148 0.72 -0.2
2,278,345 - Dshi_2148 0.78 -0.7
2,278,381 - Dshi_2148 0.82 -0.1
2,278,403 + Dshi_2148 0.84 +0.9
2,278,477 - -0.1
2,278,539 + -0.2
2,278,673 - Dshi_2149 0.28 -0.4
2,278,714 - Dshi_2149 0.37 -0.5
2,278,727 + Dshi_2149 0.40 -0.6
2,278,752 + Dshi_2149 0.46 -0.5
2,278,752 + Dshi_2149 0.46 -0.3
2,278,788 - Dshi_2149 0.54 +0.9
2,278,794 - Dshi_2149 0.55 -0.5
2,278,893 + Dshi_2149 0.78 +0.4
2,278,896 + Dshi_2149 0.78 +0.5
2,278,945 + Dshi_2149 0.89 -0.6
2,278,994 - -0.3
2,279,011 - +0.8
2,279,065 - -0.6
2,279,154 - +1.1
2,279,431 + Dshi_2150 0.39 -3.1
2,279,466 + Dshi_2150 0.42 -3.0
2,279,468 + Dshi_2150 0.42 -2.3
2,279,519 - Dshi_2150 0.47 -1.0
2,279,547 - Dshi_2150 0.50 +2.1
2,279,713 - Dshi_2150 0.65 +2.1
2,279,713 - Dshi_2150 0.65 -1.9
2,279,733 + Dshi_2150 0.67 -2.5
2,279,746 - Dshi_2150 0.68 -1.2
2,279,746 - Dshi_2150 0.68 -3.1
2,279,774 + Dshi_2150 0.71 -2.8
2,279,806 - Dshi_2150 0.74 -2.8
2,279,930 - Dshi_2150 0.85 -2.8
2,279,941 + Dshi_2150 0.86 -3.2
2,279,967 - Dshi_2150 0.89 -2.3
2,280,020 + -3.0
2,280,054 - -2.7

Or see this region's nucleotide sequence