Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2095

Experiment: m.b. Cephalothin 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_2094 and Dshi_2095 are separated by 135 nucleotidesDshi_2095 and Dshi_2096 are separated by 165 nucleotides Dshi_2094: Dshi_2094 - translation elongation factor P (RefSeq), at 2,217,877 to 2,218,518 _2094 Dshi_2095: Dshi_2095 - hypothetical protein (RefSeq), at 2,218,654 to 2,218,974 _2095 Dshi_2096: Dshi_2096 - cobyric acid synthase CobQ (RefSeq), at 2,219,140 to 2,220,600 _2096 Position (kb) 2218 2219Strain fitness (log2 ratio) -2 -1 0 1at 2217.735 kb on - strandat 2217.798 kb on + strandat 2217.890 kb on + strandat 2217.922 kb on + strandat 2217.931 kb on - strandat 2217.958 kb on - strand, within Dshi_2094at 2217.975 kb on - strand, within Dshi_2094at 2218.018 kb on - strand, within Dshi_2094at 2218.346 kb on + strand, within Dshi_2094at 2218.354 kb on - strand, within Dshi_2094at 2218.490 kb on - strandat 2218.515 kb on + strandat 2218.973 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml
remove
2,217,735 - -0.5
2,217,798 + +0.4
2,217,890 + -0.5
2,217,922 + -0.2
2,217,931 - -0.3
2,217,958 - Dshi_2094 0.13 -0.8
2,217,975 - Dshi_2094 0.15 -0.1
2,218,018 - Dshi_2094 0.22 -1.2
2,218,346 + Dshi_2094 0.73 -2.3
2,218,354 - Dshi_2094 0.74 -1.1
2,218,490 - +0.5
2,218,515 + +0.1
2,218,973 + +0.5

Or see this region's nucleotide sequence