Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1956 and Dshi_1957 are separated by 68 nucleotides Dshi_1957 and Dshi_1958 are separated by 58 nucleotides
Dshi_1956: Dshi_1956 - NAD-dependent epimerase/dehydratase (RefSeq), at 2,049,974 to 2,050,936
_1956
Dshi_1957: Dshi_1957 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 2,051,005 to 2,052,432
_1957
Dshi_1958: Dshi_1958 - NAD-dependent epimerase/dehydratase (RefSeq), at 2,052,491 to 2,055,133
_1958
Position (kb)
2051
2052
2053 Strain fitness (log2 ratio)
-2
-1
0
1 at 2050.025 kb on - strand at 2050.042 kb on + strand at 2050.120 kb on + strand, within Dshi_1956 at 2050.153 kb on - strand, within Dshi_1956 at 2050.440 kb on - strand, within Dshi_1956 at 2050.450 kb on - strand, within Dshi_1956 at 2050.515 kb on - strand, within Dshi_1956 at 2050.526 kb on + strand, within Dshi_1956 at 2050.558 kb on - strand, within Dshi_1956 at 2050.602 kb on + strand, within Dshi_1956 at 2051.144 kb on - strand at 2051.308 kb on - strand, within Dshi_1957 at 2051.422 kb on - strand, within Dshi_1957 at 2051.964 kb on + strand, within Dshi_1957 at 2052.007 kb on - strand, within Dshi_1957 at 2052.048 kb on + strand, within Dshi_1957 at 2052.152 kb on - strand, within Dshi_1957 at 2052.353 kb on + strand at 2052.361 kb on - strand at 2052.364 kb on + strand at 2052.364 kb on + strand at 2052.393 kb on - strand at 2052.443 kb on + strand at 2052.472 kb on - strand at 2052.521 kb on - strand at 2052.581 kb on + strand at 2052.646 kb on - strand at 2052.669 kb on - strand at 2052.682 kb on + strand at 2052.685 kb on - strand at 2052.725 kb on + strand at 2052.772 kb on - strand, within Dshi_1958 at 2052.841 kb on + strand, within Dshi_1958 at 2052.953 kb on + strand, within Dshi_1958 at 2052.961 kb on - strand, within Dshi_1958 at 2052.971 kb on - strand, within Dshi_1958 at 2053.140 kb on - strand, within Dshi_1958 at 2053.164 kb on - strand, within Dshi_1958 at 2053.164 kb on - strand, within Dshi_1958 at 2053.164 kb on - strand, within Dshi_1958 at 2053.317 kb on + strand, within Dshi_1958 at 2053.404 kb on - strand, within Dshi_1958
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 2,050,025 - -1.1 2,050,042 + +1.3 2,050,120 + Dshi_1956 0.15 -0.3 2,050,153 - Dshi_1956 0.19 -0.4 2,050,440 - Dshi_1956 0.48 -2.4 2,050,450 - Dshi_1956 0.49 -0.0 2,050,515 - Dshi_1956 0.56 +0.4 2,050,526 + Dshi_1956 0.57 +0.0 2,050,558 - Dshi_1956 0.61 -0.5 2,050,602 + Dshi_1956 0.65 -0.2 2,051,144 - -0.1 2,051,308 - Dshi_1957 0.21 -0.7 2,051,422 - Dshi_1957 0.29 +0.1 2,051,964 + Dshi_1957 0.67 -0.8 2,052,007 - Dshi_1957 0.70 -0.2 2,052,048 + Dshi_1957 0.73 -0.9 2,052,152 - Dshi_1957 0.80 -1.8 2,052,353 + -1.1 2,052,361 - +0.3 2,052,364 + +0.9 2,052,364 + -0.1 2,052,393 - -0.4 2,052,443 + +0.2 2,052,472 - -0.4 2,052,521 - -0.8 2,052,581 + -0.6 2,052,646 - +1.0 2,052,669 - -0.5 2,052,682 + -0.5 2,052,685 - -0.4 2,052,725 + +0.3 2,052,772 - Dshi_1958 0.11 +0.1 2,052,841 + Dshi_1958 0.13 -0.5 2,052,953 + Dshi_1958 0.17 -1.5 2,052,961 - Dshi_1958 0.18 -0.2 2,052,971 - Dshi_1958 0.18 -0.4 2,053,140 - Dshi_1958 0.25 -0.2 2,053,164 - Dshi_1958 0.25 -0.1 2,053,164 - Dshi_1958 0.25 -1.8 2,053,164 - Dshi_1958 0.25 +0.8 2,053,317 + Dshi_1958 0.31 -0.2 2,053,404 - Dshi_1958 0.35 -0.7
Or see this region's nucleotide sequence