Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1591

Experiment: m.b. Cephalothin 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1590 and Dshi_1591 are separated by 90 nucleotidesDshi_1591 and Dshi_1592 are separated by 37 nucleotidesDshi_1592 and Dshi_1593 are separated by 35 nucleotides Dshi_1590: Dshi_1590 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 1,656,339 to 1,657,472 _1590 Dshi_1591: Dshi_1591 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,657,563 to 1,658,480 _1591 Dshi_1592: Dshi_1592 - hypothetical protein (RefSeq), at 1,658,518 to 1,659,390 _1592 Dshi_1593: Dshi_1593 - Homoserine O-succinyltransferase (RefSeq), at 1,659,426 to 1,660,343 _1593 Position (kb) 1657 1658 1659Strain fitness (log2 ratio) -1 0 1at 1656.566 kb on - strand, within Dshi_1590at 1656.623 kb on + strand, within Dshi_1590at 1656.623 kb on + strand, within Dshi_1590at 1656.623 kb on + strand, within Dshi_1590at 1656.633 kb on + strand, within Dshi_1590at 1656.802 kb on - strand, within Dshi_1590at 1657.072 kb on - strand, within Dshi_1590at 1657.337 kb on + strand, within Dshi_1590at 1657.371 kb on + strandat 1657.440 kb on - strandat 1657.480 kb on + strandat 1657.486 kb on + strandat 1657.557 kb on + strandat 1657.565 kb on - strandat 1657.596 kb on + strandat 1657.707 kb on - strand, within Dshi_1591at 1658.098 kb on - strand, within Dshi_1591at 1658.098 kb on - strand, within Dshi_1591at 1658.179 kb on - strand, within Dshi_1591at 1658.208 kb on + strand, within Dshi_1591at 1658.216 kb on - strand, within Dshi_1591at 1658.221 kb on - strand, within Dshi_1591at 1658.284 kb on + strand, within Dshi_1591at 1658.292 kb on - strand, within Dshi_1591at 1658.361 kb on - strand, within Dshi_1591at 1658.410 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml
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1,656,566 - Dshi_1590 0.20 -0.5
1,656,623 + Dshi_1590 0.25 +0.1
1,656,623 + Dshi_1590 0.25 -0.0
1,656,623 + Dshi_1590 0.25 +0.4
1,656,633 + Dshi_1590 0.26 +0.0
1,656,802 - Dshi_1590 0.41 +0.0
1,657,072 - Dshi_1590 0.65 -0.7
1,657,337 + Dshi_1590 0.88 +0.2
1,657,371 + +0.3
1,657,440 - +0.5
1,657,480 + -0.2
1,657,486 + -0.2
1,657,557 + +0.1
1,657,565 - -0.6
1,657,596 + -1.5
1,657,707 - Dshi_1591 0.16 +0.5
1,658,098 - Dshi_1591 0.58 -0.5
1,658,098 - Dshi_1591 0.58 +0.3
1,658,179 - Dshi_1591 0.67 -0.2
1,658,208 + Dshi_1591 0.70 +0.3
1,658,216 - Dshi_1591 0.71 -0.3
1,658,221 - Dshi_1591 0.72 +0.0
1,658,284 + Dshi_1591 0.79 +0.9
1,658,292 - Dshi_1591 0.79 +0.6
1,658,361 - Dshi_1591 0.87 +0.5
1,658,410 + +0.1

Or see this region's nucleotide sequence