Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1297 and Dshi_1298 are separated by 24 nucleotides Dshi_1298 and Dshi_1299 are separated by 74 nucleotides Dshi_1299 and Dshi_1300 are separated by 143 nucleotides
Dshi_1297: Dshi_1297 - acyl-CoA dehydrogenase domain protein (RefSeq), at 1,351,256 to 1,352,419
_1297
Dshi_1298: Dshi_1298 - hypothetical protein (RefSeq), at 1,352,444 to 1,352,782
_1298
Dshi_1299: Dshi_1299 - OmpW family protein (RefSeq), at 1,352,857 to 1,353,465
_1299
Dshi_1300: Dshi_1300 - Propionyl-CoA carboxylase (RefSeq), at 1,353,609 to 1,355,213
_1300
Position (kb)
1352
1353
1354 Strain fitness (log2 ratio)
-2
-1
0
1 at 1351.996 kb on - strand, within Dshi_1297 at 1352.049 kb on + strand, within Dshi_1297 at 1352.116 kb on + strand, within Dshi_1297 at 1352.158 kb on + strand, within Dshi_1297 at 1352.223 kb on + strand, within Dshi_1297 at 1352.250 kb on + strand, within Dshi_1297 at 1352.273 kb on + strand, within Dshi_1297 at 1352.278 kb on + strand, within Dshi_1297 at 1352.334 kb on - strand at 1352.399 kb on - strand at 1352.511 kb on + strand, within Dshi_1298 at 1352.599 kb on + strand, within Dshi_1298 at 1352.616 kb on + strand, within Dshi_1298 at 1352.621 kb on - strand, within Dshi_1298 at 1352.828 kb on + strand at 1352.829 kb on + strand at 1352.855 kb on + strand at 1352.862 kb on - strand at 1352.884 kb on - strand at 1353.095 kb on - strand, within Dshi_1299 at 1353.119 kb on + strand, within Dshi_1299 at 1353.119 kb on + strand, within Dshi_1299 at 1353.369 kb on - strand, within Dshi_1299 at 1353.424 kb on - strand at 1353.674 kb on - strand at 1353.917 kb on + strand, within Dshi_1300 at 1353.952 kb on + strand, within Dshi_1300 at 1354.101 kb on + strand, within Dshi_1300 at 1354.172 kb on + strand, within Dshi_1300 at 1354.188 kb on - strand, within Dshi_1300 at 1354.299 kb on - strand, within Dshi_1300 at 1354.322 kb on - strand, within Dshi_1300
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 1,351,996 - Dshi_1297 0.64 -0.4 1,352,049 + Dshi_1297 0.68 -0.5 1,352,116 + Dshi_1297 0.74 -0.2 1,352,158 + Dshi_1297 0.77 -0.4 1,352,223 + Dshi_1297 0.83 -0.3 1,352,250 + Dshi_1297 0.85 +0.3 1,352,273 + Dshi_1297 0.87 -0.0 1,352,278 + Dshi_1297 0.88 -0.2 1,352,334 - +0.0 1,352,399 - -0.3 1,352,511 + Dshi_1298 0.20 -0.6 1,352,599 + Dshi_1298 0.46 +0.5 1,352,616 + Dshi_1298 0.51 -2.3 1,352,621 - Dshi_1298 0.52 +0.4 1,352,828 + -0.4 1,352,829 + -0.5 1,352,855 + +0.5 1,352,862 - -0.1 1,352,884 - +0.2 1,353,095 - Dshi_1299 0.39 +0.0 1,353,119 + Dshi_1299 0.43 +0.1 1,353,119 + Dshi_1299 0.43 -1.4 1,353,369 - Dshi_1299 0.84 -0.5 1,353,424 - -0.2 1,353,674 - +0.1 1,353,917 + Dshi_1300 0.19 +0.2 1,353,952 + Dshi_1300 0.21 +0.1 1,354,101 + Dshi_1300 0.31 +0.0 1,354,172 + Dshi_1300 0.35 -0.1 1,354,188 - Dshi_1300 0.36 -0.1 1,354,299 - Dshi_1300 0.43 +0.0 1,354,322 - Dshi_1300 0.44 +0.4
Or see this region's nucleotide sequence