Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1287 and Dshi_1288 are separated by 345 nucleotides Dshi_1288 and Dshi_1289 are separated by 47 nucleotides Dshi_1289 and Dshi_1290 are separated by 91 nucleotides
Dshi_1287: Dshi_1287 - protein of unknown function DUF395 YeeE/YedE (RefSeq), at 1,339,875 to 1,340,969
_1287
Dshi_1288: Dshi_1288 - amidohydrolase (RefSeq), at 1,341,315 to 1,342,481
_1288
Dshi_1289: Dshi_1289 - glutamine amidotransferase class-I (RefSeq), at 1,342,529 to 1,343,269
_1289
Dshi_1290: Dshi_1290 - molybdenum cofactor biosynthesis protein A (RefSeq), at 1,343,361 to 1,344,371
_1290
Position (kb)
1341
1342
1343 Strain fitness (log2 ratio)
-2
-1
0
1 at 1340.351 kb on - strand, within Dshi_1287 at 1340.740 kb on - strand, within Dshi_1287 at 1340.892 kb on + strand at 1340.931 kb on - strand at 1340.945 kb on + strand at 1340.964 kb on + strand at 1341.052 kb on + strand at 1341.240 kb on + strand at 1341.500 kb on + strand, within Dshi_1288 at 1341.523 kb on - strand, within Dshi_1288 at 1341.603 kb on - strand, within Dshi_1288 at 1341.964 kb on + strand, within Dshi_1288 at 1341.989 kb on + strand, within Dshi_1288 at 1342.164 kb on + strand, within Dshi_1288 at 1342.208 kb on - strand, within Dshi_1288 at 1342.298 kb on + strand, within Dshi_1288 at 1342.443 kb on + strand at 1343.019 kb on - strand, within Dshi_1289 at 1343.019 kb on - strand, within Dshi_1289 at 1343.126 kb on + strand, within Dshi_1289 at 1343.263 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 1,340,351 - Dshi_1287 0.43 -0.2 1,340,740 - Dshi_1287 0.79 +0.6 1,340,892 + -0.1 1,340,931 - -1.0 1,340,945 + +0.1 1,340,964 + +0.3 1,341,052 + -0.3 1,341,240 + +0.7 1,341,500 + Dshi_1288 0.16 -0.5 1,341,523 - Dshi_1288 0.18 -0.8 1,341,603 - Dshi_1288 0.25 +0.1 1,341,964 + Dshi_1288 0.56 +0.1 1,341,989 + Dshi_1288 0.58 -0.4 1,342,164 + Dshi_1288 0.73 -1.2 1,342,208 - Dshi_1288 0.77 -1.3 1,342,298 + Dshi_1288 0.84 -2.0 1,342,443 + +0.3 1,343,019 - Dshi_1289 0.66 +0.2 1,343,019 - Dshi_1289 0.66 -0.1 1,343,126 + Dshi_1289 0.81 -0.5 1,343,263 + +0.2
Or see this region's nucleotide sequence