Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1196 and Dshi_1197 overlap by 4 nucleotides Dshi_1197 and Dshi_1198 are separated by 48 nucleotides
Dshi_1196: Dshi_1196 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,235,704 to 1,237,050
_1196
Dshi_1197: Dshi_1197 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 1,237,047 to 1,238,915
_1197
Dshi_1198: Dshi_1198 - beta-lactamase (RefSeq), at 1,238,964 to 1,239,965
_1198
Position (kb)
1237
1238
1239 Strain fitness (log2 ratio)
-2
-1
0
1 at 1236.094 kb on + strand, within Dshi_1196 at 1236.280 kb on + strand, within Dshi_1196 at 1236.358 kb on - strand, within Dshi_1196 at 1236.459 kb on + strand, within Dshi_1196 at 1236.634 kb on - strand, within Dshi_1196 at 1236.654 kb on + strand, within Dshi_1196 at 1236.857 kb on + strand, within Dshi_1196 at 1237.039 kb on - strand at 1237.192 kb on - strand at 1237.233 kb on + strand at 1237.340 kb on - strand, within Dshi_1197 at 1237.424 kb on - strand, within Dshi_1197 at 1237.506 kb on - strand, within Dshi_1197 at 1237.533 kb on - strand, within Dshi_1197 at 1237.834 kb on + strand, within Dshi_1197 at 1237.845 kb on + strand, within Dshi_1197 at 1238.049 kb on + strand, within Dshi_1197 at 1238.122 kb on + strand, within Dshi_1197 at 1238.130 kb on - strand, within Dshi_1197 at 1238.203 kb on + strand, within Dshi_1197 at 1238.274 kb on + strand, within Dshi_1197 at 1238.274 kb on + strand, within Dshi_1197 at 1238.344 kb on - strand, within Dshi_1197 at 1238.500 kb on + strand, within Dshi_1197 at 1238.561 kb on - strand, within Dshi_1197 at 1238.721 kb on + strand, within Dshi_1197 at 1238.765 kb on - strand at 1238.772 kb on - strand at 1238.780 kb on - strand at 1239.047 kb on - strand at 1239.101 kb on + strand, within Dshi_1198 at 1239.110 kb on - strand, within Dshi_1198 at 1239.209 kb on + strand, within Dshi_1198 at 1239.252 kb on + strand, within Dshi_1198 at 1239.286 kb on - strand, within Dshi_1198 at 1239.435 kb on - strand, within Dshi_1198 at 1239.521 kb on + strand, within Dshi_1198 at 1239.524 kb on - strand, within Dshi_1198
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 1,236,094 + Dshi_1196 0.29 -1.5 1,236,280 + Dshi_1196 0.43 -0.6 1,236,358 - Dshi_1196 0.49 -0.4 1,236,459 + Dshi_1196 0.56 -0.9 1,236,634 - Dshi_1196 0.69 -0.9 1,236,654 + Dshi_1196 0.71 -1.0 1,236,857 + Dshi_1196 0.86 +0.5 1,237,039 - -0.7 1,237,192 - -0.3 1,237,233 + -2.0 1,237,340 - Dshi_1197 0.16 +1.1 1,237,424 - Dshi_1197 0.20 -1.2 1,237,506 - Dshi_1197 0.25 -0.0 1,237,533 - Dshi_1197 0.26 -0.7 1,237,834 + Dshi_1197 0.42 -0.6 1,237,845 + Dshi_1197 0.43 -0.2 1,238,049 + Dshi_1197 0.54 -0.3 1,238,122 + Dshi_1197 0.58 +0.6 1,238,130 - Dshi_1197 0.58 -1.4 1,238,203 + Dshi_1197 0.62 -1.5 1,238,274 + Dshi_1197 0.66 -0.7 1,238,274 + Dshi_1197 0.66 -1.3 1,238,344 - Dshi_1197 0.69 +0.1 1,238,500 + Dshi_1197 0.78 -0.5 1,238,561 - Dshi_1197 0.81 -0.2 1,238,721 + Dshi_1197 0.90 +0.1 1,238,765 - -1.5 1,238,772 - -0.0 1,238,780 - +0.4 1,239,047 - -0.8 1,239,101 + Dshi_1198 0.14 -0.1 1,239,110 - Dshi_1198 0.15 +0.3 1,239,209 + Dshi_1198 0.24 +0.1 1,239,252 + Dshi_1198 0.29 -0.5 1,239,286 - Dshi_1198 0.32 -0.0 1,239,435 - Dshi_1198 0.47 -0.0 1,239,521 + Dshi_1198 0.56 +0.3 1,239,524 - Dshi_1198 0.56 +0.6
Or see this region's nucleotide sequence